Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0570 ATGGCGTCGAAGCCTTCGCCTTCGCCCTCATCTTCCAGATCGGAGCTTATCATCGATCCTTCCGGTGAGAAAGTGGACGCTGTGAGTCAGACCGTTAAAGATGTGTTGCCGGTTATTGATTCTTTAAAGAAACAAGTTGCTGTGGAACGGATTGTTTATGTAAAGAATAGAATAGAAGAAAACAGACAGAAACTGGTTGGTGTCACAAATCATGTCTGCAAAATGGCAATGGAGAGAAGGAACAGCAGCGTTGCTGATTCTAACAGAAGTCTAGACCTGCTTACAAAGAGGCAAAAAGATGCAATTGATATGCACAACGGTGTTCATGCAAGTAATGGTGATGTAGAGAGCAATGGCTATCATGAAGATACCCACGGTTCTACAGCAGTTCTTCTAGGGTCTAATGTTGCTGTTAAGAATGCTGTTCGTCCTATCAAATTACCTGAAATTAAAAAATTGCCTCCTTATACTACATGGATATTTCTGGATAGAAATCAAAGAATGACCGAGGATCAATCAGTTGTAGGCCGAAGACGAATTTATTATGATCAAAATGGTGGAGAAGCACTTATATGCAGTGATAGTGAGGAAGAAATTATGGAGGATGAAGAGGAGAAAAGAGAATTCATAGAATCAGAAGATTATATACTTCGCATGACTGTCAAAGAATTCGGTTTAACTGACAACGTTATGGAGTCATTGGCTCAGTGCTTTTCTAGAAACACTAACGAAATTAAGGCAAGGTATGAAGCTCTTAGTATTCAAGACAATGCTGATGGGTCTTCCAAGGCTGTAGATTCTGGAGAGAACTCTCAGAGTGGCAATTCTTTTCTGGAAAAGGATCTGGAAGCCGCTCTTGACTCTTTTGACAACCTCTTTTGTCGACGATGTCTTGTTTTTGATTGTAGATTACATGGATGCTCACAAGATCTTGTCTTCCCAGCTGAGAAGCAACCTATATGGATCCCTCCTGATAGTGACAATGCACCCTGTGGGCCAAATTGTTTCCGATCGGTGCTTAAGTCAGAAAGATTTGCCAAAACATCTTCTGCCCAGGCTGATGGTGAAGATAAGTCCTCTGGTGGTGTTTTATCTAGGAAAAAGTCTTCTGCTAAAAGGCGGTTAAAAGGAAGCCAAAGTGAAAGTGCTTCATCTAACGCAAAGAACATATCTGAGAGTAGTGACTCAGAGAATGGTCCTGGACGAGATGCTGCTTCAGCATCTCACTCAGCTCCTCCTAAAGCTAAACCCATGGGGAAAGCTGGAACTGGTAAGAGGAACAGTAAGCGAGTGGCAGAACGAGTCTTAGTATGCATGCAGAAAAGGCAGAAGAAAACAGCAGTTTCTGATTCCGATTCCATAAGTGAAGCTCTTGAGCGCTCATCAAATGATATTGTCACTGATCTACATGCTATGAGCAGTGAAGACAACACAAGGAAAGAAGATTCAGTAGATGACAATGTTTGTAAACAAGAAATCACAGACAATAAATCTTGGAAAGCTCTTGAAAAGGGGCTTTTAGAGAAAGGAATGGAGATTTTTGGTAGAAACAGTTGCTTAATAGCTAGGAATCTCTTAAATGGTCTAAAAACTTGTTGGGATGTTTTCCAATACATAAATTGTGAAGAAGGAAAGATGTCTGGTCCCCCTGGGGATGTTGCAAATTCCCTTTTGGAGGGCTATTCCAAGGGTAATAATGAAGTGAGAAGAAGATCTAGGTTTTTACGCAGAAGAGGAAGAGTACGTCGATTGAAGTACACATGGAAATCTGCTGCTTATCATTCCATCAGGAAAAGGATTACAGAGAGAAAGGATCAACCCTGCCGGCAGTATAATCCATGTGGTTGCCAATCAGCTTGTGGAAAGCAGTGTCCTTGTCTTCTTAATGGAACCTGCTGTGAGAAGTACTGTGGGTGCCCCAAGAGCTGCAAGAATCGGTTTCGTGGTTGTCATTGTGCTAAGAGTCAATGCCGAAGTCGTCAATGTCCATGCTTTGCCGCTGATAGGGAATGTGATCCAGATGTCTGTAGGAATTGTTGGGTCAGTTGTGGCGATGGTACTCTTGGGATTCCTAGCCAAAGAGGGGACAATTACGAATGTAGAAATATGAAGCTTCTTCTCAAACAGCAGCAAAGGGTTCTTCTTGGAAGGTCGGATGTATCAGGCTGGGGAGCTTTCTTAAAGAATAGTGTTGGTAAACATGAATACCTTGGAGAGTATACAGGAGAGTTGATTTCTCATCGGGAAGCAGATAAGCGAGGAAAGATATATGACCGTGAAAATTCATCTTTTCTCTTTAATTTGAATGACCAGTTCGTTCTAGATGCTTACCGAAAGGGTGACAAATTGAAGTTTGCGAACCATTCGCCCGATCCAAATTGCTATGCAAAGGTTATAATGGTTGCTGGAGATCATAGGGTAGGCATTTTTGCAAAGGAACGGATTTGCGCCGGGGAGGAACTGTTCTATGATTATCGTTATGAGCCTGACAGGGCCCCTGCCTGGGCTCGGAAACCTGAGGCATCTGGATCCAAAAAAGAGGACGGGGCTCCTTCAAGTGGTCGTGCAAAGAAGCTTGCTTAA 2583 0.4262 MASKPSPSPSSSRSELIIDPSGEKVDAVSQTVKDVLPVIDSLKKQVAVERIVYVKNRIEENRQKLVGVTNHVCKMAMERRNSSVADSNRSLDLLTKRQKDAIDMHNGVHASNGDVESNGYHEDTHGSTAVLLGSNVAVKNAVRPIKLPEIKKLPPYTTWIFLDRNQRMTEDQSVVGRRRIYYDQNGGEALICSDSEEEIMEDEEEKREFIESEDYILRMTVKEFGLTDNVMESLAQCFSRNTNEIKARYEALSIQDNADGSSKAVDSGENSQSGNSFLEKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPIWIPPDSDNAPCGPNCFRSVLKSERFAKTSSAQADGEDKSSGGVLSRKKSSAKRRLKGSQSESASSNAKNISESSDSENGPGRDAASASHSAPPKAKPMGKAGTGKRNSKRVAERVLVCMQKRQKKTAVSDSDSISEALERSSNDIVTDLHAMSSEDNTRKEDSVDDNVCKQEITDNKSWKALEKGLLEKGMEIFGRNSCLIARNLLNGLKTCWDVFQYINCEEGKMSGPPGDVANSLLEGYSKGNNEVRRRSRFLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQSACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWVSCGDGTLGIPSQRGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERICAGEELFYDYRYEPDRAPAWARKPEASGSKKEDGAPSSGRAKKLA* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0570 860 ProSiteProfiles SET domain profile. 711 826 IPR001214 GO:0005515
Vra11g0570 860 SUPERFAMILY SET domain 585 831 IPR046341 -
Vra11g0570 860 MobiDBLite consensus disorder prediction 376 403 - -
Vra11g0570 860 SMART set_7 711 832 IPR001214 GO:0005515
Vra11g0570 860 MobiDBLite consensus disorder prediction 348 429 - -
Vra11g0570 860 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 464 858 - -
Vra11g0570 860 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 15 458 - -
Vra11g0570 860 CDD SET_EZH 711 827 - -
Vra11g0570 860 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 860 IPR025778 GO:0031519
Vra11g0570 860 Pfam CXC domain 649 680 IPR041355 -
Vra11g0570 860 MobiDBLite consensus disorder prediction 834 860 - -
Vra11g0570 860 Pfam SET domain 722 825 IPR001214 GO:0005515
Vra11g0570 860 SMART CXC_2 645 682 IPR033467 -
Vra11g0570 860 MobiDBLite consensus disorder prediction 834 853 - -
Vra11g0570 860 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 15 458 IPR045318 GO:0006338|GO:0018024
Vra11g0570 860 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 464 858 IPR045318 GO:0006338|GO:0018024
Vra11g0570 860 Coils Coil 193 213 - -
Vra11g0570 860 MobiDBLite consensus disorder prediction 1 22 - -
Vra11g0570 860 Gene3D SET domain 611 828 IPR046341 -
Vra11g0570 860 MobiDBLite consensus disorder prediction 1 17 - -
Vra11g0570 860 ProSiteProfiles CXC domain profile. 597 696 IPR026489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0570 Vra-Chr11 4402410 4412284 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0570 700 829 C2H2 Transcription Factor Family AT2G23740 27.211 1.02e-09 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vra11g0570 SET 8.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0570 - K11430 gmx:100809840 1544.64