Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0567 ATGTGGGATCTGAATGACTCTCCCGATCAGAGGAAGGACTATGAATCTGAAGGTTGCTCTTCGTTGGATGATGATAAAGGCAGGAGAGTGGGATATGTTTCAAATTCAAGCTCCTCAGCTGTGGTCCTCGAAGATGGATTGGAAGAAGAAGACAGTGACAGGGGTGGAAGCAGAACCTTGGAGAGAAAAAGTAGTAAAATATTCGGCTTTTCAGTTACACACAATGACAGTGACCACCCACCCGTCACCCAGCAGTTTTTTTCGGTGGAGGATTCTGACCTTCCTGTATCTGAAGCAGTCGCCGTGGGCGGCGGAAGCTCCTTCCCTCAAGCTCACTGGGTAGGTGTAAAATTCCGGCAATCGGAAACTCTTGGCCCCGGAAAATCAGTGAAAACGTCGGAGCCTATAAAGAAAAGTCGGCGAGGACCACGGTCACGGAGCTCACAGTATCGAGGAGTTACCTTTTACAGAAGAACTGGTAGATGGGAGTCTCATATATGGGATTGTGGAAAGCAAGTGTATTTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCTTATGATAGAGCGGCCATTAAGTTCCGGGGAGTGGAGGCAGATATCAACTTCAACATAGAAGACTACGAAGAAGACTTGAAGCAGATGAACAATTTAACCAAGGAAGAGTTTGTGCACGTACTTCGCCGACAAAGCACTGGATTTCCGAGAGGAAGCTCCAAATATAGAGGTGTAACTTTACACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTGGGAAAAAAGTACGTTTATCTGGGTCTGTTTGACACCGAGATTGAAGCTGCAAGGGCATATGACAAAGCGGCAATTAAATGCAACGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATATATGATAATGAACTTAATTCGGATTCCTCAGGTGTAGCTGCTGATCACAATCTTGATTTGAGTTTGGGCAATTTGAGCTCTAGACGTGGCAATGGTCAAATATCGGGGAATCACTTCCCAAATTCTGCGTCCGATCAGCACCTGCCTCCTGCATCTAATTGGCGGAATGGAGGAACAAAGCCTAAGGTTCATCTTGTAAATATACTACCAAAACCATGTGATAGGAACAACATGGAAGCCTATGCAAGAGATTGGCTCGGGGAGAGTGAAACCTTGAGACTGCTAAACCAAACTCACCTTCAATCTCCAACGACTAAAGAAATGCATAGATATGGTCCGTATAGGTCACCAGCTGAGCCACAACTGTCTCACAGTTTTGCACGTCTTCACCCACCAAATTTTCATGTTCCCAGCAGCAGCAGCAACGGAGGCCGTATTGGAAGCGATCTTTCGTTATCAATGTCTGATCAACAGCAATGGCAAGCCGGGCATCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCTCAGATTAGACCCTCCTAA 1458 0.4664 MWDLNDSPDQRKDYESEGCSSLDDDKGRRVGYVSNSSSSAVVLEDGLEEEDSDRGGSRTLERKSSKIFGFSVTHNDSDHPPVTQQFFSVEDSDLPVSEAVAVGGGSSFPQAHWVGVKFRQSETLGPGKSVKTSEPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMNNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNSDSSGVAADHNLDLSLGNLSSRRGNGQISGNHFPNSASDQHLPPASNWRNGGTKPKVHLVNILPKPCDRNNMEAYARDWLGESETLRLLNQTHLQSPTTKEMHRYGPYRSPAEPQLSHSFARLHPPNFHVPSSSSNGGRIGSDLSLSMSDQQQWQAGHPHLLATAAASSGFPPQIRPS* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0567 485 Gene3D AP2/ERF domain 148 207 IPR036955 GO:0003700|GO:0006355
Vra11g0567 485 Gene3D AP2/ERF domain 240 299 IPR036955 GO:0003700|GO:0006355
Vra11g0567 485 MobiDBLite consensus disorder prediction 1 30 - -
Vra11g0567 485 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 485 - -
Vra11g0567 485 MobiDBLite consensus disorder prediction 124 150 - -
Vra11g0567 485 PRINTS Ethylene responsive element binding protein signature 242 253 IPR001471 GO:0003700|GO:0006355
Vra11g0567 485 PRINTS Ethylene responsive element binding protein signature 280 300 IPR001471 GO:0003700|GO:0006355
Vra11g0567 485 Coils Coil 199 219 - -
Vra11g0567 485 MobiDBLite consensus disorder prediction 429 462 - -
Vra11g0567 485 MobiDBLite consensus disorder prediction 1 60 - -
Vra11g0567 485 MobiDBLite consensus disorder prediction 402 421 - -
Vra11g0567 485 ProSiteProfiles AP2/ERF domain profile. 241 298 IPR001471 GO:0003700|GO:0006355
Vra11g0567 485 MobiDBLite consensus disorder prediction 435 462 - -
Vra11g0567 485 MobiDBLite consensus disorder prediction 334 359 - -
Vra11g0567 485 SUPERFAMILY DNA-binding domain 148 206 IPR016177 GO:0003677
Vra11g0567 485 MobiDBLite consensus disorder prediction 334 354 - -
Vra11g0567 485 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 485 - -
Vra11g0567 485 CDD AP2 240 300 IPR001471 GO:0003700|GO:0006355
Vra11g0567 485 SMART rav1_2 149 211 IPR001471 GO:0003700|GO:0006355
Vra11g0567 485 SMART rav1_2 241 304 IPR001471 GO:0003700|GO:0006355
Vra11g0567 485 ProSiteProfiles AP2/ERF domain profile. 149 205 IPR001471 GO:0003700|GO:0006355
Vra11g0567 485 SUPERFAMILY DNA-binding domain 240 300 IPR016177 GO:0003677
Vra11g0567 485 CDD AP2 149 206 IPR001471 GO:0003700|GO:0006355
Vra11g0567 485 Pfam AP2 domain 149 197 IPR001471 GO:0003700|GO:0006355
Vra11g0567 485 Pfam AP2 domain 240 289 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0567 Vra-Chr11 4362099 4365540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0567 1 334 AP2-EREBP Transcription Factor Family AT4G36920 67.045 1.10e-129 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vra11g0567 AP2 3.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0567 K09284 - gmx:100786333 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0567 11 4362099 4365540 Vra7g1171 7 27845424 27849178 PCT