Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0565 ATGGACCCTCAAGGAGGAGAGAGAGAACCCACAAGGAAGCGAAGCGGCGTGGCGGTGGCGGTCGAGGGAGAGAGAAGATACAAAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTCGCGGAAATTAGGGAACCCAACAAGCGTTCCAGGATTTGGCTCGGTTCCTATTCCACCCCTGTCGCCGCCGCACGTGCTTACGACACAGCCGTCTTTTACCTCAGGGGACCCTCCGCGCGGCTCAACTTCCCCGACCTTCTTGTTGGAGAGGGCGCTGCCCTTGTAGCCGGTTGCGACATGTCAGCTGCCTCTATTAGGAAGAAGGCCACCGAGGTCGGTGCCAGAGTTGATGCTCTCCAAGCATCGCTGCACCACCACCACGTGGCGCCGCCGCCGCCGGAGCTTCTCTCGCGCGGCGACGGAGGTGGGTCAGGGGATTTCGCGGTTGACCTGAACAAGATGCCCGAACCCGAGAGTGAGGACTGCGAATGGGATGTGAATTGA 501 0.6028 MDPQGGEREPTRKRSGVAVAVEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLVGEGAALVAGCDMSAASIRKKATEVGARVDALQASLHHHHVAPPPPELLSRGDGGGSGDFAVDLNKMPEPESEDCEWDVN* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0565 166 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Vra11g0565 166 PRINTS Ethylene responsive element binding protein signature 65 85 IPR001471 GO:0003700|GO:0006355
Vra11g0565 166 MobiDBLite consensus disorder prediction 125 166 - -
Vra11g0565 166 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Vra11g0565 166 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Vra11g0565 166 CDD AP2 26 85 IPR001471 GO:0003700|GO:0006355
Vra11g0565 166 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Vra11g0565 166 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 7 160 - -
Vra11g0565 166 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 7 160 - -
Vra11g0565 166 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Vra11g0565 166 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0565 Vra-Chr11 4346076 4347044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0565 14 160 AP2-EREBP Transcription Factor Family AT3G50260 61.905 1.24e-54 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra11g0565 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0565 K09286 - gmx:100527066 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0565 11 4346076 4347044 Vra7g1172 7 27878053 27878976 PCT