Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0563 ATGGACGACATGGCTGCCTACTACTCACAGCCCCAACCGGCGGGCCTTCTCACTTACCATCAGTACTATCAACCGCCACCTCCGCCACCTCCTCCGCTGTTGGCGGTGGTACCACCGCCACCCGGCGCGGTTGTCCCGCCGGCGCACCACGGGCATCCGCCATACGTGGCTCAGCATCAGCAGTTCGGTTCTTACGGCGCTCCTCAACCCTCCTCGAACGAGGTTCGCACCCTCTTCGTCGCTGGCCTTCCAGAAGATGTAAAGCCCCGCGAAATCTACAATCTTTTCCGCGAATTTCCCGGTTACGAGTCTTCACATCTACGGAGTCCCACCAATTCGTCTCAGCCTTTTGCTTTTGCTGTGTTCGCCAGTCAGCAGTCAGCAATCATGGCAATGCATGCTTTGAATGGCATGGTGTTTGATCTTGAAAAGGGCTCCACTCTTTTTATTGATCTGGCAAAATCAAACTCTAGATCCAAACGCACTAGGATAGATGATGAGAGAATCGGTGCCGATAAGAAAGCTAGAAGTCTTACATCATCATGGGTCACTCCCGATTCTGCAGGTGTTAGCAGCATTCACATGCCTGGAATGGGTAATCCTGCTTTCAACACGAACACGTTTGGTTATCCATCTGCACAAAGTCTTGGAAGTGCTGATGGTAGTGCTGTGAATGATGGTCGATACCTGAATATGAAGAAGTCTTCATCTCCTTACATTCCTCAAAACTCAACCCCGTGTGCAACTTTATTTGTAGCAAATCTGGGGCCATCTTGTAATGAACAAGAGCTAATGCAAGTTTTTTCTAGATACCATGGATTTTTGAAGCTGAAGATGCAGAGCACATACGGGGCGCCAGTAGCATTTGTTGATTTCCAGGATGCCACTAGCTCAACTGAAGCTCTGAACAGTTTGCAAGGCACAATTCTTCACTCTTCGCAAACTGGCGAGGGAATGCGTTTAGAATATGCAAAATCGCGGATGGGCATGCGAAAGAAGCCAAAGTAA 1008 0.495 MDDMAAYYSQPQPAGLLTYHQYYQPPPPPPPPLLAVVPPPPGAVVPPAHHGHPPYVAQHQQFGSYGAPQPSSNEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSPTNSSQPFAFAVFASQQSAIMAMHALNGMVFDLEKGSTLFIDLAKSNSRSKRTRIDDERIGADKKARSLTSSWVTPDSAGVSSIHMPGMGNPAFNTNTFGYPSAQSLGSADGSAVNDGRYLNMKKSSSPYIPQNSTPCATLFVANLGPSCNEQELMQVFSRYHGFLKLKMQSTYGAPVAFVDFQDATSSTEALNSLQGTILHSSQTGEGMRLEYAKSRMGMRKKPK* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0563 335 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 248 326 IPR000504 GO:0003723
Vra11g0563 335 CDD RRM_RBPMS_like 76 151 - -
Vra11g0563 335 Gene3D - 240 334 IPR012677 -
Vra11g0563 335 SMART rrm1_1 249 322 IPR000504 GO:0003723
Vra11g0563 335 SMART rrm1_1 77 151 IPR000504 GO:0003723
Vra11g0563 335 CDD RRM_scw1_like 246 325 - -
Vra11g0563 335 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 1 321 - -
Vra11g0563 335 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 155 IPR000504 GO:0003723
Vra11g0563 335 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 141 IPR000504 GO:0003723
Vra11g0563 335 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 250 313 IPR000504 GO:0003723
Vra11g0563 335 Gene3D - 72 165 IPR012677 -
Vra11g0563 335 PANTHER RNA-BINDING PROTEIN-RELATED 1 321 - -
Vra11g0563 335 SUPERFAMILY RNA-binding domain, RBD 75 312 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0563 Vra-Chr11 4324509 4328973 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0563 78 312 Eukaryotic Initiation Factors Gene Family AT4G34110 21.978 1.54e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0563 - - gmx:100780983 532.332