Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0559 ATGCCTGTGGAGCTTATGATGGGTTATAGGAACGACAGTTTCGCCGAAGAGAATGCTGTTCGAGAAGCCGCGTCAGGGCTAGAGAGCGTGGAGAAGCTCATCAGGTTGCTGTCACACGCTCAGCTGCAACAACACCAACTTCAACAACAATCGCACGCGACCAATTCAAAGTCTTCCATGGAAATTGAATCCGATTACGGAGCTGTCGCTGACGTGGCGGTTTCCAAGTTCAAGAAGGTTATTTCGCTTCTGGGCCGAACCAGAACCGGTCACGCGCGCTTCAGAAGAGCCCCTGTGCCTCCACCTCCTCCTTCCGAACCTAGATTCTACCGCGCAACGCCGCTGCAGCAGATCCCGCCGCCCCCCGAACACCCTTTCATCCCAAAAAATGCTCCGATTGAGACCAAGGACTCTTCCAAGACCATCAACTTCTCTTATTCTAATTCCTTCGTCTCCTCCCTCACCGGCGACACCGACACCAAACAGCCCTCTTCCTCGTCGCCTGCGGCCGCGACGCCTTTTCAGATCACGAATCTCTCTCAGGTCTCCTCCGCCGGAAAGCCTCCTATTTCTTCGTCTTCGTTGAAGAGGAAGTGCAGCTCTGATAATTTGGGTTCTGCCAAGTGTGGCAGTTCCTCCAGCCGATGCCATTGCTCAAAGAAGAGCAGAAAAATGAGGTTGAAGAGGGTGGTGAGGGTACCCGCAATAAGTTTGAAGATGGCTGATATTCCACCGGATGATTATTCTTGGAGGAAATACGGACAGAAACCGATTAAAGGATCTCCTCATCCAAGGGGCTATTACAAGTGCAGCAGTGTTAGAGGGTGTCCAGCGCGCAAGCATGTAGAGAGGGCTCTGGATGACCCTTCTATGTTGGTAGTAACCTATGAAGGTGAACACAATCACACACTCTCTGCAGTCGAAGCTACCACTAATCTTATCCTAGAATCTTCTTAG 957 0.5152 MPVELMMGYRNDSFAEENAVREAASGLESVEKLIRLLSHAQLQQHQLQQQSHATNSKSSMEIESDYGAVADVAVSKFKKVISLLGRTRTGHARFRRAPVPPPPPSEPRFYRATPLQQIPPPPEHPFIPKNAPIETKDSSKTINFSYSNSFVSSLTGDTDTKQPSSSSPAAATPFQITNLSQVSSAGKPPISSSSLKRKCSSDNLGSAKCGSSSSRCHCSKKSRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHTLSAVEATTNLILESS* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0559 318 MobiDBLite consensus disorder prediction 93 134 - -
Vra11g0559 318 Pfam WRKY DNA -binding domain 246 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra11g0559 318 MobiDBLite consensus disorder prediction 180 216 - -
Vra11g0559 318 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 13 318 - -
Vra11g0559 318 SUPERFAMILY WRKY DNA-binding domain 241 304 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra11g0559 318 SMART WRKY_cls 244 304 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra11g0559 318 MobiDBLite consensus disorder prediction 180 217 - -
Vra11g0559 318 MobiDBLite consensus disorder prediction 96 128 - -
Vra11g0559 318 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 13 318 IPR044810 GO:0003700
Vra11g0559 318 Coils Coil 30 50 - -
Vra11g0559 318 Gene3D WRKY domain 230 305 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra11g0559 318 ProSiteProfiles WRKY domain profile. 239 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra11g0559 318 Pfam Plant zinc cluster domain 196 242 IPR018872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0559 Vra-Chr11 4295457 4297694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0559 1 308 WRKY Transcription Factor Family AT2G24570 44.970 1.56e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra11g0559 WRKY 3.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0559 - - gmx:100804089 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0559 11 4295457 4297694 Vra7g2546 7 45790389 45792325 PCT
Vra7g1179 7 27970945 27972726 Vra11g0559 11 4295457 4297694 PCT