Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0555 ATGGAACCAGCTTCTGCTTATTCTACATCTCAACCTACTCCTCCAGTTTCTAGTGCTGAAGAACAACACTCAACCAAAGTGACAGGACAGATCAACAACGCACATGATTCACCATCAACTTTACCTGCTTCTGGCATGTCATTATGGACAAAGCATCTGAAATTTCCAGGCCTTGGCCTTGGACAAGCACAACAGGATTCGCAGACCGATAACACAGGCATATCAGCTTTTGCTCGCCTGACTGGTGGGCTTGGATTGCGAACGCAGTCAAAAGAAACTGCTGCTCCAGTCAATTCGGGACCTGATCAATCTAATTTAATTGAATCCTTCGCCAAAGGGTTGATGGACTCTTCCAAGAGTGCGGTAAAAGCTGTCCAGGTCAAAGCACGCCATATCGTCTCTCAGAATAAACGTAGATACCAGGAAGATGGATTTGATTTGGATATGACATACATCACTGAAAATATAATTGCTATGGGATTTCCGGGTGGTGATATTAGCTCTGGAATTGTTGGATACATTGAGGGGTTCTATCGCAATCACATGGAAGAAGTGATCAAATTTTTTGAAACACATCATAAGGGTAAATACAAAGTATACAATCTTTGTTCAGAAAGGTTATATGATGGATCATTATTCCAGGGGAAGGTTGCAACTTTCCCATTTAGTGATCATAATTGCCCCCCTATTCAACTTATAGCATCATTCTGTCAAAGTGCATATTCATGGTTGAAGGAGGATATTCAAAATGTGGTGGTTGTTCATTGTAAAGCTGGTATGGGGAGGACTGGACTGATGATATGTTGTCTTCTTTTGTCTCTTAAGTTCTTCCCAACTGCAGAGGAAGCTATTGATTACTTTAACCATAAAAGATGTGTAGATGGAAAGGCTCTAGTCCTCCCTAGTCAAATAAGATATGTAAAATACTTTGAACGGACTTTAACACAATTCAATGGAGAAGTCCAGCCTGGACGAAGGTGCTTGCTAAGAGGGTTCCGCATTCACAAGTGCCCTTATTGGGTTAGACCATCTATTACAATTTCTGATCATAAGGGAGTTTTGTTTGCCACAAGAAACCATCCCAAAACAAAAGATCTATTGCCAGAAGATTTCTGGATCAGTGCACCGAAGAAAAGAATTGTGGTTTTTGCTCTACCAGGAGAACCTGGTCTAGCAGAGTTGGTAGGAGACTTCAAAATTCATTTTAATGATAGACAAGGAGATTTCTACTGTTGGATGAATACAACAATGACAGAAAATCGAATAATTTTAGATGGTTCAGATTTTGATGGTTTCGACAAGAGGAAGATCCCCGCTCCAGGATTCCGGGTGGAAGTTGTCATGATAGACTATAATGGCACCCTACCTTCAGCGACAAAAGCAAATCCCGCCAGCAAAGGATCTGACCGAAACACAGTCAATGCCCTACCTGGTCCAAAGTCTACTACATCTAATTCAACTGAGAGTAAACTCCCAAGAAATGAAGATGATGTATTCTCAGACAGTGATGAAGAGGAGGGCCGAGATACACAAAGCAAGAAAGCTGCAACTGAGTATAAATTTATGGCACCTCATCAAGCTTCCGAGGAGACAACAGACCATGTAGGGATGTTGACACACTCAACTGATCGGTTGTCACTAAAGAATGAGGCAGGCATGCAGAACAATACTTCTGAACAATCAACTGCAGATGAACATCATAAAATTCATACAGGCAATAGCAGCACAAACGTGGAATCTGTAGGGGCAAATGACATCAAGGCAATTGCAGCAGATGCTTCAGTTTTTTCCTTTGGGGATGAAGACTTTGAAAGTGATTGA 1821 0.4152 MEPASAYSTSQPTPPVSSAEEQHSTKVTGQINNAHDSPSTLPASGMSLWTKHLKFPGLGLGQAQQDSQTDNTGISAFARLTGGLGLRTQSKETAAPVNSGPDQSNLIESFAKGLMDSSKSAVKAVQVKARHIVSQNKRRYQEDGFDLDMTYITENIIAMGFPGGDISSGIVGYIEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDGSLFQGKVATFPFSDHNCPPIQLIASFCQSAYSWLKEDIQNVVVVHCKAGMGRTGLMICCLLLSLKFFPTAEEAIDYFNHKRCVDGKALVLPSQIRYVKYFERTLTQFNGEVQPGRRCLLRGFRIHKCPYWVRPSITISDHKGVLFATRNHPKTKDLLPEDFWISAPKKRIVVFALPGEPGLAELVGDFKIHFNDRQGDFYCWMNTTMTENRIILDGSDFDGFDKRKIPAPGFRVEVVMIDYNGTLPSATKANPASKGSDRNTVNALPGPKSTTSNSTESKLPRNEDDVFSDSDEEEGRDTQSKKAATEYKFMAPHQASEETTDHVGMLTHSTDRLSLKNEAGMQNNTSEQSTADEHHKIHTGNSSTNVESVGANDIKAIAADASVFSFGDEDFESD* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0555 606 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 252 291 IPR000387 GO:0016311|GO:0016791
Vra11g0555 606 MobiDBLite consensus disorder prediction 554 579 - -
Vra11g0555 606 CDD PTP_PTEN 148 312 IPR045101 GO:0016791
Vra11g0555 606 Gene3D Protein tyrosine phosphatase superfamily 123 320 IPR029021 -
Vra11g0555 606 SMART PTEN_C2_2 322 450 IPR014020 -
Vra11g0555 606 MobiDBLite consensus disorder prediction 1 45 - -
Vra11g0555 606 MobiDBLite consensus disorder prediction 456 489 - -
Vra11g0555 606 MobiDBLite consensus disorder prediction 456 514 - -
Vra11g0555 606 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 151 316 IPR029021 -
Vra11g0555 606 ProSiteProfiles C2 tensin-type domain profile. 324 451 IPR014020 -
Vra11g0555 606 ProSitePatterns Tyrosine specific protein phosphatases active site. 254 264 IPR016130 GO:0016311|GO:0016791
Vra11g0555 606 ProSiteProfiles Phosphatase tensin-type domain profile. 138 317 IPR029023 -
Vra11g0555 606 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 11 606 - -
Vra11g0555 606 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 11 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0555 Vra-Chr11 4244675 4253882 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0555 36 606 Protein tyrosine phosphatase (PTP) family AT3G19420 60.606 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0555 K01110 - gmx:100801622 1036.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0555 11 4244675 4253882 Vra8g2459 8 42607575 42615397 PCT