Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra11g0555 | ATGGAACCAGCTTCTGCTTATTCTACATCTCAACCTACTCCTCCAGTTTCTAGTGCTGAAGAACAACACTCAACCAAAGTGACAGGACAGATCAACAACGCACATGATTCACCATCAACTTTACCTGCTTCTGGCATGTCATTATGGACAAAGCATCTGAAATTTCCAGGCCTTGGCCTTGGACAAGCACAACAGGATTCGCAGACCGATAACACAGGCATATCAGCTTTTGCTCGCCTGACTGGTGGGCTTGGATTGCGAACGCAGTCAAAAGAAACTGCTGCTCCAGTCAATTCGGGACCTGATCAATCTAATTTAATTGAATCCTTCGCCAAAGGGTTGATGGACTCTTCCAAGAGTGCGGTAAAAGCTGTCCAGGTCAAAGCACGCCATATCGTCTCTCAGAATAAACGTAGATACCAGGAAGATGGATTTGATTTGGATATGACATACATCACTGAAAATATAATTGCTATGGGATTTCCGGGTGGTGATATTAGCTCTGGAATTGTTGGATACATTGAGGGGTTCTATCGCAATCACATGGAAGAAGTGATCAAATTTTTTGAAACACATCATAAGGGTAAATACAAAGTATACAATCTTTGTTCAGAAAGGTTATATGATGGATCATTATTCCAGGGGAAGGTTGCAACTTTCCCATTTAGTGATCATAATTGCCCCCCTATTCAACTTATAGCATCATTCTGTCAAAGTGCATATTCATGGTTGAAGGAGGATATTCAAAATGTGGTGGTTGTTCATTGTAAAGCTGGTATGGGGAGGACTGGACTGATGATATGTTGTCTTCTTTTGTCTCTTAAGTTCTTCCCAACTGCAGAGGAAGCTATTGATTACTTTAACCATAAAAGATGTGTAGATGGAAAGGCTCTAGTCCTCCCTAGTCAAATAAGATATGTAAAATACTTTGAACGGACTTTAACACAATTCAATGGAGAAGTCCAGCCTGGACGAAGGTGCTTGCTAAGAGGGTTCCGCATTCACAAGTGCCCTTATTGGGTTAGACCATCTATTACAATTTCTGATCATAAGGGAGTTTTGTTTGCCACAAGAAACCATCCCAAAACAAAAGATCTATTGCCAGAAGATTTCTGGATCAGTGCACCGAAGAAAAGAATTGTGGTTTTTGCTCTACCAGGAGAACCTGGTCTAGCAGAGTTGGTAGGAGACTTCAAAATTCATTTTAATGATAGACAAGGAGATTTCTACTGTTGGATGAATACAACAATGACAGAAAATCGAATAATTTTAGATGGTTCAGATTTTGATGGTTTCGACAAGAGGAAGATCCCCGCTCCAGGATTCCGGGTGGAAGTTGTCATGATAGACTATAATGGCACCCTACCTTCAGCGACAAAAGCAAATCCCGCCAGCAAAGGATCTGACCGAAACACAGTCAATGCCCTACCTGGTCCAAAGTCTACTACATCTAATTCAACTGAGAGTAAACTCCCAAGAAATGAAGATGATGTATTCTCAGACAGTGATGAAGAGGAGGGCCGAGATACACAAAGCAAGAAAGCTGCAACTGAGTATAAATTTATGGCACCTCATCAAGCTTCCGAGGAGACAACAGACCATGTAGGGATGTTGACACACTCAACTGATCGGTTGTCACTAAAGAATGAGGCAGGCATGCAGAACAATACTTCTGAACAATCAACTGCAGATGAACATCATAAAATTCATACAGGCAATAGCAGCACAAACGTGGAATCTGTAGGGGCAAATGACATCAAGGCAATTGCAGCAGATGCTTCAGTTTTTTCCTTTGGGGATGAAGACTTTGAAAGTGATTGA | 1821 | 0.4152 | MEPASAYSTSQPTPPVSSAEEQHSTKVTGQINNAHDSPSTLPASGMSLWTKHLKFPGLGLGQAQQDSQTDNTGISAFARLTGGLGLRTQSKETAAPVNSGPDQSNLIESFAKGLMDSSKSAVKAVQVKARHIVSQNKRRYQEDGFDLDMTYITENIIAMGFPGGDISSGIVGYIEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDGSLFQGKVATFPFSDHNCPPIQLIASFCQSAYSWLKEDIQNVVVVHCKAGMGRTGLMICCLLLSLKFFPTAEEAIDYFNHKRCVDGKALVLPSQIRYVKYFERTLTQFNGEVQPGRRCLLRGFRIHKCPYWVRPSITISDHKGVLFATRNHPKTKDLLPEDFWISAPKKRIVVFALPGEPGLAELVGDFKIHFNDRQGDFYCWMNTTMTENRIILDGSDFDGFDKRKIPAPGFRVEVVMIDYNGTLPSATKANPASKGSDRNTVNALPGPKSTTSNSTESKLPRNEDDVFSDSDEEEGRDTQSKKAATEYKFMAPHQASEETTDHVGMLTHSTDRLSLKNEAGMQNNTSEQSTADEHHKIHTGNSSTNVESVGANDIKAIAADASVFSFGDEDFESD* | 607 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra11g0555 | 606 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 252 | 291 | IPR000387 | GO:0016311|GO:0016791 | |
Vra11g0555 | 606 | MobiDBLite | consensus disorder prediction | 554 | 579 | - | - | |
Vra11g0555 | 606 | CDD | PTP_PTEN | 148 | 312 | IPR045101 | GO:0016791 | |
Vra11g0555 | 606 | Gene3D | Protein tyrosine phosphatase superfamily | 123 | 320 | IPR029021 | - | |
Vra11g0555 | 606 | SMART | PTEN_C2_2 | 322 | 450 | IPR014020 | - | |
Vra11g0555 | 606 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Vra11g0555 | 606 | MobiDBLite | consensus disorder prediction | 456 | 489 | - | - | |
Vra11g0555 | 606 | MobiDBLite | consensus disorder prediction | 456 | 514 | - | - | |
Vra11g0555 | 606 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 151 | 316 | IPR029021 | - | |
Vra11g0555 | 606 | ProSiteProfiles | C2 tensin-type domain profile. | 324 | 451 | IPR014020 | - | |
Vra11g0555 | 606 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 254 | 264 | IPR016130 | GO:0016311|GO:0016791 | |
Vra11g0555 | 606 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 138 | 317 | IPR029023 | - | |
Vra11g0555 | 606 | PANTHER | PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B | 11 | 606 | - | - | |
Vra11g0555 | 606 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 11 | 606 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra11g0555 | Vra-Chr11 | 4244675 | 4253882 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra11g0555 | 36 | 606 | Protein tyrosine phosphatase (PTP) family | AT3G19420 | 60.606 | 0.0 | 724 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra11g0555 | K01110 | - | gmx:100801622 | 1036.17 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vra11g0555 | 11 | 4244675 | 4253882 | Vra8g2459 | 8 | 42607575 | 42615397 | PCT |