Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0553 ATGCCTCAGCCACCCTCACCTTCCTTCCTCCTCTGTCATGAACAATACTCCTCTTTCCAACAACATTCTCCAACTCTCATAACCACCCCATCTTCACCTTCCATTTTTTCCGACCACCACCTCTTCTCCCAACACGACCACCTTCTCTCTCTACTCTCCAAAGAGGCCGCTACTCATTTCACTCCCTCCCCTTCCCACCACGTCGTACGCTGGATTTCTACACTTTCCCATTTCCACGGTTTCGCTCCTCTCACCACCGTTCTCGCCGTTAACTACTTCAACAGGTTCGTTAACAGAAGGAGCTTTAAGACCGAAGATAAACCATGGAAGACTCAACTGGCAGCCGTTGCTTGTGTCTCTCTCGCAGCAAAAGTGGAGGAAACACGGGTGCCGCTTCTTTTGGAGTTGCAAGTGGAGGAATCGGAATTTGTGTTTGAAGCGAAGACCATACATACGATGGAACTCCTCGTTTTGTCCACTCTCGAATGGAAAATGAACCCTGTCACTCCAATCTGTTTCTTTCAACACTTTCTCACAAGGCTTGCTTTAAAGCGTCACTTGCACTGGGAATTTATGTGTGGGTGTCAGCATGTTCTTCTCTCTGTCATTGCCGATTCAAGGGTTATGAGTTATCTTCCTTCTACATTGTCTGCTGCTATAATGATACACGTAATTGAAGAGATTGAACCATTGAATGCTACGGAGTACCGAAATCAACTTCTTGGTTTACTCAAAAGTAACGAGGAGCAAGTGAATGAGTGCTACAAACTGATGCTGGGATTATTAGTTTGCTGTAAAGGGATTCACAATCCTGGTCAGAGGCGCAAACGTGTCTCTGAGCCAAGTAGCCCTGATGGGGTCATTGATGCATCTTTCTGCTGTGAAAGCTCAAATGATTCGTGGTCAGTGGCATCACTTTCTGTGGAGCCAGAGTTAAAGAGGAGAAAAGATGAGGACCAGCAGATTCGTTTGCCCCCAGCGAATCGAGTGTCTCTTGATGTTCTAAATATTCCTCGTTAA 1020 0.4627 MPQPPSPSFLLCHEQYSSFQQHSPTLITTPSSPSIFSDHHLFSQHDHLLSLLSKEAATHFTPSPSHHVVRWISTLSHFHGFAPLTTVLAVNYFNRFVNRRSFKTEDKPWKTQLAAVACVSLAAKVEETRVPLLLELQVEESEFVFEAKTIHTMELLVLSTLEWKMNPVTPICFFQHFLTRLALKRHLHWEFMCGCQHVLLSVIADSRVMSYLPSTLSAAIMIHVIEEIEPLNATEYRNQLLGLLKSNEEQVNECYKLMLGLLVCCKGIHNPGQRRKRVSEPSSPDGVIDASFCCESSNDSWSVASLSVEPELKRRKDEDQQIRLPPANRVSLDVLNIPR* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0553 339 Pfam Cyclin, N-terminal domain 60 166 IPR006671 -
Vra11g0553 339 Gene3D - 167 256 - -
Vra11g0553 339 Gene3D - 57 166 - -
Vra11g0553 339 CDD CYCLIN 67 158 IPR013763 -
Vra11g0553 339 Pfam Cyclin, C-terminal domain 168 275 IPR004367 -
Vra11g0553 339 SUPERFAMILY Cyclin-like 46 166 IPR036915 -
Vra11g0553 339 PANTHER CYCLIN-D3-2 30 322 - -
Vra11g0553 339 SUPERFAMILY Cyclin-like 150 263 IPR036915 -
Vra11g0553 339 PANTHER CYCLINS 30 322 IPR039361 -
Vra11g0553 339 SMART Cyclin_C_2 168 296 IPR004367 -
Vra11g0553 339 SMART cyclin_7 70 159 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0553 Vra-Chr11 4237101 4238818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0553 46 329 Core Cell Cycle Gene Families AT5G67260 47.195 3.63e-85 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0553 K14505 - gmx:100802683 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0553 11 4237101 4238818 Vra8g2458 8 42602049 42604247 PCT
Vra7g1185 7 28059207 28061162 Vra11g0553 11 4237101 4238818 PCT