Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0549 ATGAACCCAGGCGTTGTTGTATCCAGAAAGGACATGGACCGGATCAAAGGCCCATGGAGCCCCGAGGAGGACGATGCTCTGCAGAATCTCGTCGAGAAGCACGGGCCCAGGAACTGGTCCCTCATCAGTAAGTCTATCCCTGGCCGCTCCGGCAAGTCCTGCAGGCTTCGCTGGTGCAATCAGCTCTCCCCTCAGGTCGAGCACAGGGCCTTCACGCCCGAAGAAGACGACACCATAGTCAGGGCCCATGCTCGCTTCGGCAACAAATGGGCCACCATAGCCCGCTTGCTCCAGGGCAGAACCGACAACGCAATCAAGAACCACTGGAACTCCACCCTGAAGCGCAAGTGCGCCTCATCCATCATGGACGACCATCTTCCACCGCTTAAGAGGTCCGTCAGCGCCGGTGCGGCCATCCCCGTTTCCACCGGACTCTACATCAACCCTCCCACCCCGGGTAGCCCCTCCGGATCCGACGTGAGCGAGTCCAGCGTGCCGGTTGCATCCCCCTCACATGTCTTCCGTCCTGTGCCTAGGACTGCCGTGGTTTTACCGCCAGTAGAAACAACCTCCTCCTCCAATGACCCTCCTACTTCCCTTTCCCTGTCCCTTCCCGGTGTCGACTCTTCTGAGGTCTCCAATCGGGTAACCGAGTCTGCCCACCCTGTACCACCGCCACAGCCGTCGAACACCATCCCTTTGCTGCCAATGATGACTGCTCCGATGTCGGTTGTGCCCCAGTTGAAGCCACCCGGATTGGGGGCTTTCAATCTAAGTGCAGAGTTTTTGGCGGTGATGCAGGAAATGATAAGGAAGGAGGTGAGGAGTTATATGGAGCGGCAGAATCCGAATGGGATGTGTTTCCAGGCAGCCGATGATGGGTTTAGGAATACTTCCGTCAAGCGAATTGGGATTAGCAGGGTGGACTCGTAA 933 0.5788 MNPGVVVSRKDMDRIKGPWSPEEDDALQNLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIVRAHARFGNKWATIARLLQGRTDNAIKNHWNSTLKRKCASSIMDDHLPPLKRSVSAGAAIPVSTGLYINPPTPGSPSGSDVSESSVPVASPSHVFRPVPRTAVVLPPVETTSSSNDPPTSLSLSLPGVDSSEVSNRVTESAHPVPPPQPSNTIPLLPMMTAPMSVVPQLKPPGLGAFNLSAEFLAVMQEMIRKEVRSYMERQNPNGMCFQAADDGFRNTSVKRIGISRVDS* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0549 310 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vra11g0549 310 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Vra11g0549 310 MobiDBLite consensus disorder prediction 187 231 - -
Vra11g0549 310 Gene3D - 69 127 - -
Vra11g0549 310 MobiDBLite consensus disorder prediction 148 172 - -
Vra11g0549 310 CDD SANT 18 60 IPR001005 -
Vra11g0549 310 PANTHER MYB PROTEIN-RELATED 6 280 - -
Vra11g0549 310 Gene3D - 15 67 - -
Vra11g0549 310 PANTHER MYB TRANSCRIPTION FACTOR 6 280 - -
Vra11g0549 310 SMART sant 15 64 IPR001005 -
Vra11g0549 310 SMART sant 67 115 IPR001005 -
Vra11g0549 310 ProSiteProfiles Myb-like domain profile. 11 62 IPR001005 -
Vra11g0549 310 MobiDBLite consensus disorder prediction 148 168 - -
Vra11g0549 310 CDD SANT 70 113 IPR001005 -
Vra11g0549 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 117 IPR017930 -
Vra11g0549 310 MobiDBLite consensus disorder prediction 187 217 - -
Vra11g0549 310 Pfam Myb-like DNA-binding domain 19 77 - -
Vra11g0549 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 66 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0549 Vra-Chr11 4208064 4209564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0549 8 309 MYB Transcription Factor Family AT4G37260 53.709 7.33e-102 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra11g0549 Myb_DNA-bind_6 3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0549 K09422 - gmx:780556 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1189 7 28126995 28128446 Vra11g0549 11 4208064 4209564 PCT