Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0541 ATGCCTCCACAAGACCACCACCAGCCGCTGTTAGCGGAGGAGCAGCAAGAGACTGCGTACGATTCCGCGGAGAAGGTCGTGGTTGTCGGAATCGACGAGCAGGACGGCGACGTGGAGGCGCCGCCGTTCTCGTGGCGGAAACTATGGCTGTTCACGGGGCCGGGGTTTCTGATGAGCATCGCGTTTCTGGATCCCGGGAATCTGGAGGGGGATCTTCAGTCTGGTGCCATTGCTGGGTACTCGCTCTTGTGGCTCCTCATGTGGGCCACTGCTATGGGCCTCATTATCCAGCTTCTCTCGGCTCGCCTCGGCGTTGCCACTGGGAGACACTTAGCGGAACTGTGCAGGGAAGAGTATCCTGCATGGGCTAGGATTGTTCTCTGGCTTATGACTGAAATTGCTCTTATTGGCGCTGACATTCAGGAGGTTATTGGGAGCGCTATTGCTATTAGGATTCTCAGTAACGGCGTCGTTCCCCTTTGGGCTGGGGTCGTCGTTACAGCTTTAGATTGTTTCATTTTTCTCTTTCTTGAGAACTATGGTGTGAGGAAGCTGGAGGCATTTTTCGCTGTTCTGATTGCTGTAATGGCTCTCTCGTTTGCGTGGATGTTTGGTGAAGCAAAGCCAAACGGTGTTGGTGTTCTTGTTGGTATTTTGGTTCCTAAACTTAGCTCCAGAACTATACAACAAGCTGTTGGAGTTGTGGGTTGCATTATTATGCCTCACAATGTGTTTTTGCATTCTGCGCTTGTTCAATCTAGGCAGGTTGACCCCAGCAAGAAAGGCCGTGTTCAGGAAGCTCTTAATTACTACTCGATAGAGTCCACCATCGCCCTTGCGGTGTCCTTTGTCATTAATATATTTGTTACAACTGTGTTTGCCAAGGGCTTTTATGGTACTGAAATAGCAAACAACATTGGTCTTGTAAACGCAGGTCAGTACCTTCAGGAGAAGTACGGGGGTGGACTTTTCCCAATCCTGTATATATGGGGTATTGGGTTGTTAGCAGCCGGCCAGAGTAGCACAATTACTGGTACATATGCGGGACAATTTATCATGGGGGGTTTTCTGAATTTAAGGTTGAAAAAGTGGGTGAGGGCATTGATTACTCGAAGTTTTGCAATCATCCCAACAATGATAGTTGCTCTTATATTCGATACCTCGGAGGAGTCATTAGATGTTCTGAACGAATGGCTTAATATTCTCCAGTCAGTTCAAATCCCATTTGCACTCATTCCCTTGCTTTGCTTGGTGTCCAAAGAACAGATAATGGGCAGTTTCAGAATTGGCCCTGTCCTTAAGATTATTTCCTGGCTTGTGGCTGCTCTGGTGATAGTGATAAACGGCTATCTTTTGGTGGAATTCTTCTCCTCTGAAGTGAATGGAGCAGTGTTTTCCGCTATAGTGTTTGTATTAACAGCTGCATATGTTGCATTCGTACTTTACCTTATTTCACGAGCCATTACCTATACACCATGGCAAAGTTTAACCGGATCTAAGACAGTTGCTACCGCAGAGAATTGA 1524 0.4744 MPPQDHHQPLLAEEQQETAYDSAEKVVVVGIDEQDGDVEAPPFSWRKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATAMGLIIQLLSARLGVATGRHLAELCREEYPAWARIVLWLMTEIALIGADIQEVIGSAIAIRILSNGVVPLWAGVVVTALDCFIFLFLENYGVRKLEAFFAVLIAVMALSFAWMFGEAKPNGVGVLVGILVPKLSSRTIQQAVGVVGCIIMPHNVFLHSALVQSRQVDPSKKGRVQEALNYYSIESTIALAVSFVINIFVTTVFAKGFYGTEIANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWVRALITRSFAIIPTMIVALIFDTSEESLDVLNEWLNILQSVQIPFALIPLLCLVSKEQIMGSFRIGPVLKIISWLVAALVIVINGYLLVEFFSSEVNGAVFSAIVFVLTAAYVAFVLYLISRAITYTPWQSLTGSKTVATAEN* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0541 507 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 424 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra11g0541 507 PRINTS Natural resistance-associated macrophage protein signature 127 153 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra11g0541 507 PRINTS Natural resistance-associated macrophage protein signature 157 176 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra11g0541 507 PRINTS Natural resistance-associated macrophage protein signature 182 203 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra11g0541 507 PRINTS Natural resistance-associated macrophage protein signature 231 254 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra11g0541 507 PRINTS Natural resistance-associated macrophage protein signature 338 357 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra11g0541 507 PRINTS Natural resistance-associated macrophage protein signature 366 383 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra11g0541 507 PRINTS Natural resistance-associated macrophage protein signature 400 419 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra11g0541 507 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 7 507 - -
Vra11g0541 507 Pfam Natural resistance-associated macrophage protein 69 430 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra11g0541 507 Hamap Divalent metal cation transporter MntH [mntH]. 34 456 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra11g0541 507 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 7 507 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra11g0541 507 Coils Coil 500 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0541 Vra-Chr11 4140675 4144490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0541 1 493 Inorganic Solute Cotransporters AT2G23150 77.490 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0541 K21398 - gmx:100807811 942.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0541 11 4140675 4144490 Vra7g1201 7 28316400 28320477 PCT