Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0535 ATGTTGGAGCGATGCCTGAGGCCACTGGAGATGTGTTTTGGTGGTGGAGGTGGCGACCAAAGCCTTCTCTGGGACACTGACCTTAAGCCACACGCTTCAGGGAACTACTCAATTGCAGTAGTACAAGCCAACTCCTCCTTGGAAGACCAAGCACAAGTCTTCACCTCTCCCTCCGCAACCTTTGTTGGCGTCTACGACGGCCACGGTGGACCCCAAGCTTCCCGTTTCATCACCAATCATCTCTTCTCCTTCCTCCTCAAATTCACAGAAGAGGAAGGTGGGTTGTCGGAGGAGGTGATAAAGAAGGCGTTCGCAGCGACAGAGGAGGAGTTTTTGCGTTTTGTGAAACAAACATGGATTGCGCGGCCACAGATGGCTTCAGTGGGTTCGTGCTGTATTCTGGGAGCGATTTCAAAGGACGTTCTTTATGTTGCTAATCTGGGGGATTCAAGGGCGGTTCTGGGTCGGAGAGCGTTGGAAGGAGAGGTGAATTGCGGTGGTGTGGTGGCGGAGCGTTTGTCCACTGACCATAATGTTGGAGTGGAGGAGGTCAGAAAGGAGGTGGAAGCTCTTCACCCTGATGACGCACACATTGTGGTCTGCACTCGTGGAGTTTGGCGAATCAAGGGCATTATTCAGGTATCAAGATCAATTGGAGATGCTTACTTAAAGAAAGCAAATTTTGACGCAAACCCTTTGTTCCAACAATTTGCATGTCCATTGTACTTGAAGAGACCTGTAATGACAGCCGAACCATCAATACTGATGCGGAAATTGAAGGCGAATGATCTGTTTATAGTGTTTGCATCAGATGGACTTTGGGAGCATTTAACTGATGAAGAGGTTGTTCAAATTGTCTCCGGAAATCCCAGAACAGGAATAGCAAAACGAGTGGTGACAGTTGCATTAGAAGAGGCAGCAAAGAAGAGAGATATGAGGTACGATGACTTAAAGAAAGTTGAGAAAGGTCAAAGGCGTCATTTTCATGATGATATTACAGTGATCGTTCTATATCTCGATCATTCGAAAGAATCTATAAATGGTAGGTCAAGATATAAAGGAGATTATGGCTGCATTAATACTCCCATTGATATCTTCTCTCAAAGTGCAAACGAAATTGATCTTTAA 1128 0.4619 MLERCLRPLEMCFGGGGGDQSLLWDTDLKPHASGNYSIAVVQANSSLEDQAQVFTSPSATFVGVYDGHGGPQASRFITNHLFSFLLKFTEEEGGLSEEVIKKAFAATEEEFLRFVKQTWIARPQMASVGSCCILGAISKDVLYVANLGDSRAVLGRRALEGEVNCGGVVAERLSTDHNVGVEEVRKEVEALHPDDAHIVVCTRGVWRIKGIIQVSRSIGDAYLKKANFDANPLFQQFACPLYLKRPVMTAEPSILMRKLKANDLFIVFASDGLWEHLTDEEVVQIVSGNPRTGIAKRVVTVALEEAAKKRDMRYDDLKKVEKGQRRHFHDDITVIVLYLDHSKESINGRSRYKGDYGCINTPIDIFSQSANEIDL* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0535 375 SUPERFAMILY PP2C-like 40 341 IPR036457 -
Vra11g0535 375 Gene3D - 25 347 IPR036457 -
Vra11g0535 375 PANTHER PROTEIN PHOSPHATASE 2C 63-RELATED 3 374 - -
Vra11g0535 375 CDD PP2Cc 42 339 IPR001932 -
Vra11g0535 375 Pfam Protein phosphatase 2C 57 307 IPR001932 -
Vra11g0535 375 ProSiteProfiles PPM-type phosphatase domain profile. 35 339 IPR001932 -
Vra11g0535 375 SMART PP2C_4 28 337 IPR001932 -
Vra11g0535 375 ProSitePatterns PPM-type phosphatase domain signature. 61 69 IPR000222 GO:0043169
Vra11g0535 375 PANTHER ALPHABET, ISOFORM E-RELATED 3 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0535 Vra-Chr11 4085090 4087699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0535 1 345 PP2C-type Phosphatase Gene Family AT3G51370 50.562 3.00e-131 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0535 - K01102 gmx:100802394 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0535 11 4085090 4087699 Vra8g2415 8 42273775 42276966 PCT