Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0532 ATGGTTTATCTCGCCGGTGCCGGATACAACGCAGTCGTCGGAATGAATAATCGGAGGCCAAAATTCTTTACGTCAATTATACCGAACAGCATAATTTCAACGCTATACGACGTCGCTTTTCTGTGTCGGTGTTGCAGAGAACATGACTTCAGTAGCACTTCTGAATCAGCTTGGACAGATTTCCCCGTAGAGAACGCCTACGAGCTGTTAGGAGTTTCTGAGACCAGTTCTTTTACCGAAATTAAAGCGTCGTTTCGAAAATTGGCCAAAGAAACTCACCCAGACCTCGCTGAGTCAAGCAGTGATTCCAGTGCCTCTCGACGATTTGTGCAAATTCTGGCTGCTTATGAGATTCTTTCAGATTCGCAAAAGAGAGCCCATTATGACATGTACCTGTTGTCTCAGAAAAAGCTTATGCAAAAGCATTCTGAACAGGGTTCAAAATTGTATATTTACAAATCTCAAGCTACTACGTTCAAGGAGATGGAAGTTGTTGAATGGTTAAAATGGTACAGATTAACTATTAATAATATTTTGTCAGAAAAGAGGGTGGTAGATGGAACAGGTTATTTTGATGTACTTGAGAGAGATTTTTATTCAGCTATTCATGCAGCATACTATGGTCCTGAAATTGATTCTATGCCCATGGAATTTCTTCCTGACTGCTTTGAGGCTGAGGAGAGGTCCTCTTATGAAACTCCTGAGGTTTTGCACTTAGTTTCAGGTCGTGATCTTTTCGGAATGGTTTGCCTAGCCAACAAGGTTCCAGAGATATCAACTATTAACAATGAAATGTTAACATCTTTTAGATCCTTCCATTCAGGCCCATGTCAATCTGTAACAAATGTGAATGACTACAGGAAAGCAGAAAGATCAGATGATTTTGAAACCTATCAAGGTCTCGGCTCTAAAACTTCAACTATTGTATCAGATGCATATAGACATCTTGAATTGCACATCTCAGGAAGAGTTGTTGCTACAGCATCTAGGACCCTACCTAGATGCTGTTCTGATGTAATGCAGACAGAAGATACTGAAGATCACATTCAAGTGTTCCTTAACTTATATGAAGATCCCAAACATATCATGAGTGATTTTTGGAAAGGCTACCTAGCAAATGGTGCAGTTGGAAGAAGAATTCATTTGGGAACTATATCTGGACTTGGGAGCAGTCCAGATGAAGGTTGTTGTTATGTTTACAATGACAAGGGCACAAAGACCCATGCGATTATGAAGCATAGAACATTGATGGTGAAGCATATGCACTGGTATCAGGTGGGTGAGAAAGTCTCAGTTTGCGAGTGTAGATGCACTAGAGCACATTTACCACCAAGCAAATTTTGGCTATTTGAGCCTCGCTGTGGTTTCCATGACATAGGCGGTTGGTACGTTGAGACATATGGCAAAGATAAGCACGGTCGTACAAAGCCATCACAAAGGTTTTGGGATGGCTTGGACTATAACATGCAAGCTGACAGAAGACTTCATCCAGCAATGTATTTGTTTGCTCTTGCATATCGGACACTTGATCTTGAATACGCTAAAGCAAGCAAGAAATCATTTAGGAATGTTGTTGGAGCACAAATGTTTCGAGTTATTCATTGGTGCAAGAAACTTGTTCAATAG 1626 0.4077 MVYLAGAGYNAVVGMNNRRPKFFTSIIPNSIISTLYDVAFLCRCCREHDFSSTSESAWTDFPVENAYELLGVSETSSFTEIKASFRKLAKETHPDLAESSSDSSASRRFVQILAAYEILSDSQKRAHYDMYLLSQKKLMQKHSEQGSKLYIYKSQATTFKEMEVVEWLKWYRLTINNILSEKRVVDGTGYFDVLERDFYSAIHAAYYGPEIDSMPMEFLPDCFEAEERSSYETPEVLHLVSGRDLFGMVCLANKVPEISTINNEMLTSFRSFHSGPCQSVTNVNDYRKAERSDDFETYQGLGSKTSTIVSDAYRHLELHISGRVVATASRTLPRCCSDVMQTEDTEDHIQVFLNLYEDPKHIMSDFWKGYLANGAVGRRIHLGTISGLGSSPDEGCCYVYNDKGTKTHAIMKHRTLMVKHMHWYQVGEKVSVCECRCTRAHLPPSKFWLFEPRCGFHDIGGWYVETYGKDKHGRTKPSQRFWDGLDYNMQADRRLHPAMYLFALAYRTLDLEYAKASKKSFRNVVGAQMFRVIHWCKKLVQ* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0532 541 CDD DnaJ 65 121 IPR001623 -
Vra11g0532 541 Gene3D DnaJ domain 56 155 IPR036869 -
Vra11g0532 541 SUPERFAMILY Chaperone J-domain 63 135 IPR036869 -
Vra11g0532 541 Pfam DnaJ domain 65 129 IPR001623 -
Vra11g0532 541 ProSiteProfiles dnaJ domain profile. 65 132 IPR001623 -
Vra11g0532 541 PRINTS DnaJ domain signature 67 85 IPR001623 -
Vra11g0532 541 PRINTS DnaJ domain signature 85 100 IPR001623 -
Vra11g0532 541 PRINTS DnaJ domain signature 104 124 IPR001623 -
Vra11g0532 541 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
Vra11g0532 541 SMART dnaj_3 64 124 IPR001623 -
Vra11g0532 541 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 44 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0532 Vra-Chr11 4064729 4069933 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0532 67 131 C2H2 Transcription Factor Family AT1G74250 44.118 1.50e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0532 - - vra:106777675 1108.98