Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0522 ATGGCTCGGCTCAACCTCATCCTTGTCTGGTTATTTTTCTCCACTCTCTGTCTTTATTCTTGTCCTTCCTCTGCCCAGCTAAGTCGACACCACTACGCAAAAACATGCCCAAATGTCGAAAACATCGTTAGAGAAGCAGTTAAAAAGAAATTCCATCAAACATTCGTCACGGTCCCTGCTACTCTCCGTCTCTTCTTCCACGATTGCTTCGTGCAGGGTTGTGATGCTTCGGTTTTGGTTGCGTCCACGGGAAACAACAAAGCAGAGAAGGATCACCCTGACAATCTTTCACTTGCCGGAGATGGGTTTGACACGGTGATTAAAGCAAAAGCAGCAGTGGATGCTGTTCCGCTGTGTAGGAACAAAGTTTCATGTGCTGATATTTTAGCCATGGCAACACGAGATGTTATTGCACTGGCTGGTGGGCCTTTCTACGAAGTTGAATTGGGAAGATTTGACGGGTTAAGATCTAAAGCTTCAGACGTAAACGGGAGGCTGCCTCAGCCAGAGTTCACCTTGAACCAGCTCAATTCACTGTTTGCGGCGAACGGTCTCACCCAGACAGAAATGGTAGCCCTTTCAGGTGCGCACACTGTGGGATTCTCCCATTGCAACAAGTTCTCAAAGAGAGTGTATAATTTCAAGAGCAAAAGTGGAGTGGACCCTGCACTGAACGAGAAATACGCATCACAGCTAAAGTCAATGTGCCCAAGGAACGTGGATCCAAGGATTGCCATCGATATGGATCCGACCACGCCACGAGCATTCGACAATGTTTACTACAGAAATCTTCAGCAAGGGAAGGGTCTCTTCTCTTCTGACCAAGTTCTCTTCACGGATTCAAGGTCCAAGGCTACCGTCAATGCTTTTGCCAGTAGCAGCAAAATCTTCCGTGCCAACTTCGCCGCTGCCATGACCAAATTGGGTCGAGTCGGAGTAAAAAATGCACAGAATGGCAACATTCGTACAGATTGTTCAGTCATCTAA 987 0.4732 MARLNLILVWLFFSTLCLYSCPSSAQLSRHHYAKTCPNVENIVREAVKKKFHQTFVTVPATLRLFFHDCFVQGCDASVLVASTGNNKAEKDHPDNLSLAGDGFDTVIKAKAAVDAVPLCRNKVSCADILAMATRDVIALAGGPFYEVELGRFDGLRSKASDVNGRLPQPEFTLNQLNSLFAANGLTQTEMVALSGAHTVGFSHCNKFSKRVYNFKSKSGVDPALNEKYASQLKSMCPRNVDPRIAIDMDPTTPRAFDNVYYRNLQQGKGLFSSDQVLFTDSRSKATVNAFASSSKIFRANFAAAMTKLGRVGVKNAQNGNIRTDCSVI* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0522 328 SUPERFAMILY Heme-dependent peroxidases 26 327 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vra11g0522 328 PANTHER - 1 328 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra11g0522 328 Gene3D Peroxidase, domain 2 167 308 - -
Vra11g0522 328 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Vra11g0522 328 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra11g0522 328 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra11g0522 328 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra11g0522 328 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra11g0522 328 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra11g0522 328 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra11g0522 328 PRINTS Plant peroxidase signature 247 262 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra11g0522 328 PRINTS Plant peroxidase signature 263 280 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra11g0522 328 PRINTS Plant peroxidase signature 303 316 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra11g0522 328 Pfam Peroxidase 43 293 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra11g0522 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Vra11g0522 328 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra11g0522 328 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra11g0522 328 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra11g0522 328 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra11g0522 328 PRINTS Haem peroxidase superfamily signature 249 264 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra11g0522 328 PANTHER PEROXIDASE 1 328 - -
Vra11g0522 328 CDD secretory_peroxidase 26 328 IPR033905 GO:0004601|GO:0042744
Vra11g0522 328 Gene3D - 31 328 - -
Vra11g0522 328 ProSiteProfiles Plant heme peroxidase family profile. 26 328 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0522 Vra-Chr11 3979543 3981165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0522 1 325 Peroxidase AT3G49960 64.615 4.06e-159 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0522 K00430 - gmx:100815654 618.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0522 11 3979543 3981165 Vra7g2509 7 45373161 45374727 PCT
Vra7g1219 7 28558698 28561111 Vra11g0522 11 3979543 3981165 PCT