Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0521 ATGAGTTGCAACGGGTGCCGCGTCCTTCGAAAGGGTTGCAGCGAGTCTTGTATCCTGCGGCCGTGTCTACAGTGGATCGATACTCCGGAAGCCCAAGGTCATGCCACTGTCTTTGTTGCCAAATTCTTCGGTCGTGCTGACCTCATGTCTTTCATTTCCAACGTCCCTGAAGCCCAAAGGCCCGCTCTGTTTCAGTCTCTGCTGTTTGAAGCTTGCGGACGAACGGTGAATCCCGTCAACGGTGCTGTTGGCCTTTTATGGACTGGAAACTGGCACGTGTGCCAGGCTGCGGTTGAGACGGTGCTGCGTGGAGGTACTGTCAGGCCGGTGCCGGAGCTTCTAGGCCTTGACGCTCCCACTCCGGACGACGCGTCCGAAGGCGAAGTTACCTGTAACGACAAATGGAGGGTCCGAGATCCGAACCCGAGTTTCCGGTTGCCTGGTTCGATGTCCGATAAGGCTGCTTCCGGAGGTAAACGCAAACGATTGGAAGAGCTTGCAAAGCTGCAGACGGCCACCACTGATCTCAATCTCCGTTTGACACCGAGTTTCCTGCAGAACGCGGCGAGCTTCGGTTGCCGACAGGAAATTCGATGGCCGAGATCGCCGTCGATCAACTCGGAGGAGTCCGGGACAACTACGGCGGCGTGCTTGGAAAGCGGGATCGGAGATCACTACGCTCCCGACGGAGGCCGGAAAGTGTTAAACCTGTTCATTTGA 720 0.5681 MSCNGCRVLRKGCSESCILRPCLQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPEAQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTVRPVPELLGLDAPTPDDASEGEVTCNDKWRVRDPNPSFRLPGSMSDKAASGGKRKRLEELAKLQTATTDLNLRLTPSFLQNAASFGCRQEIRWPRSPSINSEESGTTTAACLESGIGDHYAPDGGRKVLNLFI* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0521 239 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 239 - -
Vra11g0521 239 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 239 - -
Vra11g0521 239 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Vra11g0521 239 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0521 Vra-Chr11 3963017 3964367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0521 1 238 AS2 family AT3G49940 54.615 2.69e-81 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra11g0521 LOB 3.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0521 - - gmx:100802764 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0521 11 3963017 3964367 Vra8g2401 8 42196048 42198139 PCT
Vra7g1223 7 28621833 28623176 Vra11g0521 11 3963017 3964367 PCT