Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0517 ATGAAAGCTCCTCACTTGAGCCTCTTCTACTTCTACATCCTCCTCCTCACACTGTTCCTCTTCCTATCCATACCAGTCAACACTGCAAAAAGGGTCAATACTAGTACCAGCGCTAATGAATCTGGCACAAGAAGAATTCTGCACCAGCCATTGTTCCCGGCGAGTTCGGCACCACCGCCACCACTTCCGGTGGAGAGTCCTCCCTCGCCGGAAGGCGGAAACATCCCCTTCTTCCACGAGTACCCGGCGGGGCCCCCACCGGATCAGAGCCAAGCAGCCCCGTCCAGTTCCAACACTTCAATTGCAAACCCAACTGCAACACAACCCACAAAGGGAACAAAGAAGGTAGCAATCGCGATCTCAGTGGGGATTGTGACCCTTGGAATGCTATCAGCGTTGGCCTTCTTTTTGTACAAACACAGAGCCAAACACCCGGTGGAGTCTCAGAAACTGGTCGCTGGGAGTGGGAATAACAATAACAATAGCCATATCTCAAACAGAAACGAGGTTGATTCAACTGCGCCACCGTCGAGTTTCCTCTACATTGGGACAGTGGAACCCACGCGAGCCTCTACCAACGACTCGCGAGACAACAGAGATGTTAATAAGGCCAACAGATCGCCGTATCACAAGCTTAAGCGATCCGATCGCTACCGTCCAAGTCCTGAATTGCAGCCAATGCCGCCGCTCAGTAAGCCTCCCGACGGTAACTACCCGCCGGCGGTCTCCTCCTCATCGGAGTCCGATGAGGAAAGCCGCGGCACGGTGTTTCACTCACCGCAGAACTCGTCGGTCGATGGATACTACACGCCGGCTTCGCGGCAGAGCTCTCTTGTCAACGGAAGTCCCGCGAAGCGTGACATGAATTCCACGCCCACACCCGTTGTTCCGTTTTCCAAGAGAACTTCCCCCAAGTCACGGGTTTCGGCACCCTCGCCGGAGATACGCCGTGTCATCATTCCGTCTATAAAGCAGCCCCCTCCACCGTCGCCGCCGCCCCCTAAGCATTCCAGAAAGCCGAAATTTTCGGCGCCTCCCCCACCTCCGAATTTGAAGCATCTTCAGTCAACAACCGACACTGTTTCGCACGTGTCAAATAGTTTATTCAATCCTCCTCCACCACCTCCACCACCGCCTCCACCTCCGCCTCCTCCACCGCCGCCGCGAAAATCAGAGTCTCCGGCTGTTAGTGTCTCCTCTAATTCTGCATCTGTAAAGAGGCAGTCTTTATCACCAATTGAAGGCAGTGTAACGAAAGGTTCAGAAGAGGTTGAACAGAGTGTGAGCTCTTCCGAGAGGCTTGAAGCCAATGACAGGGATGGAGCCAAACCAAAATTAAAGGCTCTGCATTGGGATAAAGTGCGTGCAACCTCAGACCGTGCTACAGTGTGGGACCAGATAAAATCAAGCTCGTTTCAGTTAAATGAGGACATGATGGAATCGTTGTTTGGATGCAAAGCCACGAATTCTGCTCCGAAAGAACCTCCCAGAAAATCAGTTCTTCCTTCTGTTGATCAGGAGAACAGGGTGTTAGACCCGAAGAAGTCACAGAACATAGCTATACTGCTCAGGGCTTTGAATGTGACCAGAGAGGAGGTGTCTGAAGCTCTTTTAGATGGGAATCCTGAAGGTTTGGGCACTGAACTATTGGAAACACTAGTAAAGATGGCTCCGACTAAAGAAGAAGAGATAAAGCTTAAAAACTACGACGGTGATCTCTCAAAACTGGGATCTGCAGAAAGGTTTCTTAAAGCAGTGCTTGATATCCCTTTTGCCTTTAAAAGAGTTGAAGCTATGCTCTACAGAGCCAACTTTGATGCAGAAATTAACTACCTTAGAAAGTCTTTTCAAACCATGGAGGCTGCAAGTGGTGAATTAAAGAACAGCCGCTTATTCCTCAAACTCCTTGAAGCTGTTCTAAGGACGGGAAACAGAATGAATGTTGGCACTAATAGAGGGGATGCTAAAGCTTTCAAACTGGAGACACTCTTGAAACTAGTAGATATAAAGGGAATAGATGGAAAAACCACATTGCTCCACTTTGTGGTTCAAGAGATCATTAGATCTGAAGGTGCAGGAGCTGAATCTGCAAATGAGAATGTGAAAATGGATTCCAAATTTAATGAGGATGAGTTTAAGAAGCAAGGATTGCAGGTTGTGGCAGGGCTTAGTAGAGATCTTAGTAATGTAAAAAAAGCAGCTGGAATGGATTCAGATGTCTTGAGCAGCTATCTTTCAAAGCTTGAAACAGGGCTTGATAAAGTGCGATTGGTTTTGCAATATGAAAAGCCAGATGTGCTTGGCAATTTCTTTAATTCTACGAAGCTATTTCTGAAATATGCTGAAGATGAAATTGTAAGGATTAAAGCGGATGAGAGAAAAGCTTTGTATCTTGTAAAAGAAGTCACGGAATACTTTCATGGGAATGCAGCAAAGGAAGAAGCCCACCCTCTCAGAATTTTCATGATTGTAAGAGACTTTCTGAGTATTTTGGATCTAGTGTGCAAAGAAGTGGAAAAAATGCATGATAAAATTGTTGGTGGTTCTGGCAGATCTTTCCGAATACCTCCAAATGTATCATTACCTGTTCTCAATAGGTACAGCCATCCAAAGCAGGATAGAAGCTCAGACGAGGAAAGTTCATCCCCCTAG 2652 0.4755 MKAPHLSLFYFYILLLTLFLFLSIPVNTAKRVNTSTSANESGTRRILHQPLFPASSAPPPPLPVESPPSPEGGNIPFFHEYPAGPPPDQSQAAPSSSNTSIANPTATQPTKGTKKVAIAISVGIVTLGMLSALAFFLYKHRAKHPVESQKLVAGSGNNNNNSHISNRNEVDSTAPPSSFLYIGTVEPTRASTNDSRDNRDVNKANRSPYHKLKRSDRYRPSPELQPMPPLSKPPDGNYPPAVSSSSESDEESRGTVFHSPQNSSVDGYYTPASRQSSLVNGSPAKRDMNSTPTPVVPFSKRTSPKSRVSAPSPEIRRVIIPSIKQPPPPSPPPPKHSRKPKFSAPPPPPNLKHLQSTTDTVSHVSNSLFNPPPPPPPPPPPPPPPPPPRKSESPAVSVSSNSASVKRQSLSPIEGSVTKGSEEVEQSVSSSERLEANDRDGAKPKLKALHWDKVRATSDRATVWDQIKSSSFQLNEDMMESLFGCKATNSAPKEPPRKSVLPSVDQENRVLDPKKSQNIAILLRALNVTREEVSEALLDGNPEGLGTELLETLVKMAPTKEEEIKLKNYDGDLSKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAEINYLRKSFQTMEAASGELKNSRLFLKLLEAVLRTGNRMNVGTNRGDAKAFKLETLLKLVDIKGIDGKTTLLHFVVQEIIRSEGAGAESANENVKMDSKFNEDEFKKQGLQVVAGLSRDLSNVKKAAGMDSDVLSSYLSKLETGLDKVRLVLQYEKPDVLGNFFNSTKLFLKYAEDEIVRIKADERKALYLVKEVTEYFHGNAAKEEAHPLRIFMIVRDFLSILDLVCKEVEKMHDKIVGGSGRSFRIPPNVSLPVLNRYSHPKQDRSSDEESSSP* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0517 883 PRINTS Proline rich extensin signature 214 226 - -
Vra11g0517 883 PRINTS Proline rich extensin signature 228 244 - -
Vra11g0517 883 PRINTS Proline rich extensin signature 292 313 - -
Vra11g0517 883 PRINTS Proline rich extensin signature 327 343 - -
Vra11g0517 883 PRINTS Proline rich extensin signature 367 392 - -
Vra11g0517 883 MobiDBLite consensus disorder prediction 863 883 - -
Vra11g0517 883 MobiDBLite consensus disorder prediction 238 309 - -
Vra11g0517 883 ProSiteProfiles Formin homology-2 (FH2) domain profile. 436 857 IPR015425 -
Vra11g0517 883 SMART it6_source 436 846 IPR015425 -
Vra11g0517 883 MobiDBLite consensus disorder prediction 222 236 - -
Vra11g0517 883 MobiDBLite consensus disorder prediction 151 191 - -
Vra11g0517 883 Gene3D Formin, FH2 domain 431 843 IPR042201 -
Vra11g0517 883 PANTHER FORMIN-RELATED 3 883 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vra11g0517 883 PANTHER FORMIN-LIKE PROTEIN 3 883 - -
Vra11g0517 883 MobiDBLite consensus disorder prediction 53 70 - -
Vra11g0517 883 MobiDBLite consensus disorder prediction 90 113 - -
Vra11g0517 883 MobiDBLite consensus disorder prediction 426 441 - -
Vra11g0517 883 MobiDBLite consensus disorder prediction 50 113 - -
Vra11g0517 883 MobiDBLite consensus disorder prediction 322 352 - -
Vra11g0517 883 Pfam Formin Homology 2 Domain 441 831 IPR015425 -
Vra11g0517 883 MobiDBLite consensus disorder prediction 151 441 - -
Vra11g0517 883 MobiDBLite consensus disorder prediction 353 367 - -
Vra11g0517 883 MobiDBLite consensus disorder prediction 393 425 - -
Vra11g0517 883 MobiDBLite consensus disorder prediction 368 392 - -
Vra11g0517 883 SUPERFAMILY Formin homology 2 domain (FH2 domain) 377 842 - -
Vra11g0517 883 MobiDBLite consensus disorder prediction 192 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0517 Vra-Chr11 3896806 3902549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0517 418 873 FH2 protein (formin) Gene Family AT5G67470 72.174 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0517 - - gmx:100806929 1295.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0517 11 3896806 3902549 Vra7g1229 7 28720126 28724436 PCT