Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0515 ATGCTATCAATCAATTCATCTTATGATAGTAAGACATCTTATAATTCAAAATCAAGAAGACAAAACAACAACGACCCTTCATCAAGAAAGGATTTATGGGAGCGCCTTTTCTATCAAGGTTATAAAGCAGATGTTTGCATTAACACTAATAGTGGTGTTGTTTATGCTCATTCTAACATTATTGCCATGGCTTCTCCTGTATTGAGAGGCATGTTAAAGCAAGCACGTCGACATGGACGATGGCGAACAATATCAATCATTGGGGTTCCACATGATGCAGTCCAAGTTTTTATTCGATATTTGTACACTTATAGTTACGAGAAAGAAGATATGGATGAATTTGTTCTACATTTGTTGGTGTTGTCGCATGTATACATGGTTCCTCACTTGAAGTGTGAATGTGAACAAAAACTAGAATTGGGTTTACTCACCATGGATAACTTGGTTGACGTGTTTCAACTAGCATTGTTATGTGATGCTCCAAGACTTAGTCTCATTTGTCATCGCAAGATATTGAAAAACTTCAAAGTTGTTTCAAAGTCAGAAGGATGGAAATCAATGAAGTTAAGTCACCCATTTCTAGAAAAGGAAATTATAGAGTCAATGATAAATGAAGAAAATATAAAAAAGGAAAGGATGAGAAAAATGAATGAAAGAAAGGTATATCTACAATTGTATGAAGCCATGGAAGCTCTTGTTCATATATGTAAAGATGGTTGTCGAACTATTGGTCCTTATGACAAAGATCTTCGAGCAAACCAACCATGTAAGTATTCAGCATGCAACGGATTAGAGTTGCTTGTTCGTCATTTTGCTGCATGTAAGTTGAGAGTTCCCGGAGGTTGTGTTCATTGCAAGAGGATGTGGCAATTATTCGAGTTACACTCTCGATTATGTGTTATTCCGAACGATTGTAAAGTTCCTTTATGCAGGAACTTTAAGGAACGAATATCAAAACAAAGCAAGAAAGATGAAATTAGGTGGAAAATATTGGTTGAAAATATCTTGAGAACAAAAGGAATCAATATAGCATCATGTTTTTTGCGACAATGA 1053 0.3533 MLSINSSYDSKTSYNSKSRRQNNNDPSSRKDLWERLFYQGYKADVCINTNSGVVYAHSNIIAMASPVLRGMLKQARRHGRWRTISIIGVPHDAVQVFIRYLYTYSYEKEDMDEFVLHLLVLSHVYMVPHLKCECEQKLELGLLTMDNLVDVFQLALLCDAPRLSLICHRKILKNFKVVSKSEGWKSMKLSHPFLEKEIIESMINEENIKKERMRKMNERKVYLQLYEAMEALVHICKDGCRTIGPYDKDLRANQPCKYSACNGLELLVRHFAACKLRVPGGCVHCKRMWQLFELHSRLCVIPNDCKVPLCRNFKERISKQSKKDEIRWKILVENILRTKGINIASCFLRQ* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0515 350 Pfam TAZ zinc finger 226 310 IPR000197 -
Vra11g0515 350 SMART BTB_4 43 142 IPR000210 GO:0005515
Vra11g0515 350 CDD BACK 146 201 - -
Vra11g0515 350 Gene3D TAZ domain 216 338 IPR035898 -
Vra11g0515 350 SMART TAZ_2 219 311 IPR000197 -
Vra11g0515 350 Coils Coil 199 219 - -
Vra11g0515 350 Gene3D Potassium Channel Kv1.1; Chain A 10 142 IPR011333 -
Vra11g0515 350 Gene3D - 143 215 - -
Vra11g0515 350 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 11 348 IPR044513 -
Vra11g0515 350 SUPERFAMILY POZ domain 22 138 IPR011333 -
Vra11g0515 350 SUPERFAMILY TAZ domain 219 319 IPR035898 -
Vra11g0515 350 Pfam BTB/POZ domain 39 138 IPR000210 GO:0005515
Vra11g0515 350 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 4 11 348 - -
Vra11g0515 350 MobiDBLite consensus disorder prediction 1 27 - -
Vra11g0515 350 ProSiteProfiles BTB domain profile. 43 110 IPR000210 GO:0005515
Vra11g0515 350 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0515 Vra-Chr11 3884063 3885859 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Vra11g0515 BTB 1.2e-10 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0515 - - var:108334777 655.595