Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0507 ATGGGGAAGAAGCAACACAGTAAAGACAGGATGTTCATCACCAAAACGGAGTGGGCAACGGAATGGGGAGGAGCTAAATCCAAAGACAGTCGCACTCCTTTCAAACGTCTTCCCTTCTATTGTTGCGCGCTTACGTTTACACCCTTTGAAGAACCTGTCTGCACTGCTGATGGCAGTGTTTTCGATATCATGAATATTACTCCCTATATTTTAAAATACGGTAAACATCCAGTCACTGGAACTCCCCTCAAGCATTCGGATCTCATTCCACTAACTTTCCACAAGAATTCAGAAGGAGAATATCATTGTCCAGTGCTAAACAAAGTTTTCACTGAATTTACGCATATTGTGGCAGTGAAGACTACGGGAAATGTGTTCTGCTATGAGGCTGTTAAAGAGTTAAACATTAAGACAAAAAACTGGAAGGAGCTCCTTACTGATGAGCCATTCACAAGGGATGACCTTGTAACCATTCAGAATCCTAATGCACTTGACGACAGGGTTCTTCTGGATTTTGATCATGTTAAAAATGATTTGAAAGTTGATGATGAGGAACTACAGAAAATGAGTTCAGATCCAACCTATAACATAAACATGTCGGGTGATATCAAGCAAATGCTTAAGGAGCTTGGAACTGATAAAGGAAAGGAAACTGCAATGCATGGGGGTGGTGGTGGCAAGGCACAAAAAGAAAGGGCTGCTGCACTAGCTGCCATCATAGCTGCGAGGTCCCGTATGGATGAAGATTCCAAATCAAATCCAAATAAAGAGGCCAAAGCTCCTCAGGCATTCAGTATCGTAGATGCTGCATCAGCTGCAGTGCATGGAAGAAGTGCAGCTGCTGCTAAAGCCTCATCAGGTGATAAAACTGCTGCTAGGATAGCTATGCACATGTCTGGGGACAGGGCGCCAGTGAATGCAAAGATGGTAAAAAGCCGTTTCACAACTGGTGCTGCTTCCCGGTCTTTTACTTCAACATCATTTGATCCAGTTACAAAAAATGAATTTGAATATGTGAAAGTTGAGAAGAATCCAAAAAAGAAGGGTTATGTACAGCTGCATACGACACATGGTGATTTGAACATTGAGCTACATTGTGATATAACACCTAGGACGTGTGAAAACTTCATCACTCTTTGTGAGCGGGGATTTTATAATGGAGTTGCTTTTCATAGAAGCATAAGGAATTTTATGATACAGGGTGGTGATCCTACTGGTACTGGTCGAGGAGGTGAATCTATATGGGGAAAGCCATTTAAAGATGAACTTAACTCCAAACTAGTTCACTCTGGAAGAGGTGTGGTAAGCATGGCGAATAGTGGCCCACACACCAATGGTTCCCAATTCTTCATCTTGTACAAGTCTGCAAATCATCTAAACTTCAAACATACAGTTTTTGGAGTAGTTGTAGGTGGCTTGACCACACTTGCTGCCATGGAAAAGGTTCCAGTTGATGATAATGACCGACCTCTGGAGGAAATCAAGATAACAAGTGTCACAATTTTTGTCAATCCTTACACGGAACCAGATGAAGGAGAAGAGCATGATAATGCCACAGAGAAGAATGTAGAGGATGAGGATAATGGTAAGGTAGGCTCATGGTTTAGCAATCCTGGTGCTGGAACATCTGAATCTGGAAGTACGGGGGTCGGTGGTGGTGTCGGCAAGTACTTGAAAGCTAGGAATGCTCAAGCTACATCTGCTAATCTTGATACCAGTACAGCCGTTGTAGGAAAGAAAAGAAAAGTGGGAGTTGCCAGCAGTGACTTTAAAGATTTTTCTGCATGGGAACTTAATTTATTCCTGTTCAGCAATCAGTTGTCTGGCGTGAATGGTAAGTTCAGGCAGGCTAGGGTGGCATTCCCAAGGGCACTTCAAGTTAGTGAGCCTAGCTAG 1896 0.4293 MGKKQHSKDRMFITKTEWATEWGGAKSKDSRTPFKRLPFYCCALTFTPFEEPVCTADGSVFDIMNITPYILKYGKHPVTGTPLKHSDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDEPFTRDDLVTIQNPNALDDRVLLDFDHVKNDLKVDDEELQKMSSDPTYNINMSGDIKQMLKELGTDKGKETAMHGGGGGKAQKERAAALAAIIAARSRMDEDSKSNPNKEAKAPQAFSIVDAASAAVHGRSAAAAKASSGDKTAARIAMHMSGDRAPVNAKMVKSRFTTGAASRSFTSTSFDPVTKNEFEYVKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRTCENFITLCERGFYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGVVVGGLTTLAAMEKVPVDDNDRPLEEIKITSVTIFVNPYTEPDEGEEHDNATEKNVEDEDNGKVGSWFSNPGAGTSESGSTGVGGGVGKYLKARNAQATSANLDTSTAVVGKKRKVGVASSDFKDFSAWELNLFLFSNQLSGVNGKFRQARVAFPRALQVSEPS* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0507 631 MobiDBLite consensus disorder prediction 535 549 - -
Vra11g0507 631 Pfam U-box domain 39 90 IPR003613 GO:0004842|GO:0016567
Vra11g0507 631 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 2 594 - -
Vra11g0507 631 Gene3D - 331 514 IPR029000 -
Vra11g0507 631 CDD cyclophilin_RING 350 508 - -
Vra11g0507 631 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Vra11g0507 631 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 500 IPR002130 GO:0000413|GO:0003755
Vra11g0507 631 MobiDBLite consensus disorder prediction 508 528 - -
Vra11g0507 631 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 594 IPR044666 -
Vra11g0507 631 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 385 402 IPR020892 GO:0003755|GO:0006457
Vra11g0507 631 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Vra11g0507 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Vra11g0507 631 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413|GO:0003755
Vra11g0507 631 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413|GO:0003755
Vra11g0507 631 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413|GO:0003755
Vra11g0507 631 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413|GO:0003755
Vra11g0507 631 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413|GO:0003755
Vra11g0507 631 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 354 501 IPR002130 GO:0000413|GO:0003755
Vra11g0507 631 MobiDBLite consensus disorder prediction 506 551 - -
Vra11g0507 631 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Vra11g0507 631 SUPERFAMILY Cyclophilin-like 350 509 IPR029000 -
Vra11g0507 631 SUPERFAMILY RING/U-box 37 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0507 Vra-Chr11 3824832 3834697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0507 1 596 U-box Gene Family AT5G67530 75.748 0.0 914
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0507 K10598 - gmx:100819923 1068.91