Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0506 ATGGATACCACGTTGTTTGGTGTAGTGAGATTCCAACATCCTCAAGGTGATCAAGATCAATCCCTCAACAACTCCACCACCACCACCAGCTCTCCATCCTCCAGACAACACAACTATCCCTACCCACAAGAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACCTATCCTCGTCTTCTTCCAAGCACTACTATCCCTATCAACCCCACCCTCCCTCCACTACACCTACCACCACCACCACCACCACCACCGACCTCTCCTTCTCTCCCACCCAAGACCCCGCCTTCCCTTTCCAGCTCTCCGGCAAGTGGGCCAACGACATACTCCTCGAAACCTCACGTGCCGTCTCCGACAAGAACACCACGCGCCTCCAGCAACTCATGTGGATGCTCAACGAACTCGCCTCCCCCTACGGCGACACCGACCAGAAACTCGCCTCCTACTTCCTCCAAGCCTTCTTCAGCCGCATCACCCAAGCCGGTGACCGAACCTATCGAACCTTGGCCTCGGCCTCCGAGAGAACATGCTCCTTCGAATCCACGCGCAAGACCGTGCTGAAGTTCCAAGAGGTCAGTCCCTGGACAACCTTCGGACACGTGGCGTCCAATGGTGCCATCTTGGAAGCCTTGGAAGGCGAGCCCAAACTACACATAGTTGACATCAGCAACACCTATTGCACCCAATGGCCTACGCTCTTCGAAGCCCTTGCCACTCGAAACGACGACACTCCGCACCTCCGTCTCACCTCCCTCGTCACCGCCGCCTCCGCGCACAAGGTCATGAAGGAAATCGGCGCCAGAATGGAGAAATTTGCCAGACTCATGGGCGTGCCTTTTCAATTCAACGTCGTTCAGCACTTAGGTCAACTTTCTGACTTCGATTTCGGCGCCCTGGATATCAAAGAGGACGAGGCTTTGGCTATTAACTGTGTCAATACTTTGCATTCGGTCTCCGCCATCGGGAACCACCGTGAAGCGGTGATATCCTCGCTGAGGAGGCTGCAGCCGAGGATCGTGACGGTGGTGGAGGAGGAGGCGGACTTGGACGTGGGATTGGAGGGGTTGGAGTTCGTGAAGGGTTTTGAAGAGTGTTTGAGGTGGTTTAGGGTTTACTTCGAAGCGTTAGAAGAGAGCTTTCCGCGGACGAGCAACGAGCGGTTGATGCTGGAGCGGGCGGCGGGGAGGGCGGTGGTCGACCTGGTGGCATGTTCGGCTTCGGATTCGGTGGAGCGACGGGAGAGGGCAGGGCGGTGGACGAGGAGGATGCATGGAGGTGGATTCAATACGGTGGCGTTTAGCGAAGAGGTGTGTGATGACGTGAGAGCGTTGTTGAGGAGGTATAGGGAGGGATGGTCAATGGCACAGTGCTCCGACGCCGGAATATACCTTTCGTGGAAGGACCAGCCGGTGGTGTGGGCCAGTGCATGGAGGGCCTTGACGTAG 1449 0.5631 MDTTLFGVVRFQHPQGDQDQSLNNSTTTTSSPSSRQHNYPYPQEDEECFNFFMDEEDLSSSSSKHYYPYQPHPPSTTPTTTTTTTTDLSFSPTQDPAFPFQLSGKWANDILLETSRAVSDKNTTRLQQLMWMLNELASPYGDTDQKLASYFLQAFFSRITQAGDRTYRTLASASERTCSFESTRKTVLKFQEVSPWTTFGHVASNGAILEALEGEPKLHIVDISNTYCTQWPTLFEALATRNDDTPHLRLTSLVTAASAHKVMKEIGARMEKFARLMGVPFQFNVVQHLGQLSDFDFGALDIKEDEALAINCVNTLHSVSAIGNHREAVISSLRRLQPRIVTVVEEEADLDVGLEGLEFVKGFEECLRWFRVYFEALEESFPRTSNERLMLERAAGRAVVDLVACSASDSVERRERAGRWTRRMHGGGFNTVAFSEEVCDDVRALLRRYREGWSMAQCSDAGIYLSWKDQPVVWASAWRALT* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0506 482 ProSiteProfiles GRAS family profile. 98 479 IPR005202 -
Vra11g0506 482 MobiDBLite consensus disorder prediction 62 89 - -
Vra11g0506 482 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 479 IPR005202 -
Vra11g0506 482 MobiDBLite consensus disorder prediction 11 42 - -
Vra11g0506 482 Pfam GRAS domain family 109 479 IPR005202 -
Vra11g0506 482 PANTHER PROTEIN SHORT-ROOT 2 479 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Vra11g0506 482 MobiDBLite consensus disorder prediction 14 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0506 Vra-Chr11 3818693 3820717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0506 37 479 GRAS Transcription Factor Family AT4G37650 62.577 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra11g0506 GRAS 7.2e-105 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0506 - - gmx:100797072 764.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0506 11 3818693 3820717 Vra7g1234 7 28771484 28773484 PCT