Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0502 ATGGGTGCTCCTAAGCAAAAGTGGACAGCGGAGGAAGAAGCAGCATTGAAAGCTGGAGTTGTTAAACATGGGGCTGGAAAATGGCGCACCATACTTACCGATCCAGAGTTCAGTTCCATTCTGCGCATGCGTTCTAATGTCGATCTCAAGGACAAATGGAGGAACATAAATGTGACAGCAATATGGGGATCAAGGCAGAAGGCAAAGCTTGCTCTTAAAAAGAACCTACTACCATCCCCAAAAATTGACAATAATCACATGGCCTTGAGTACTGCAGTTCAACGTGACAGAGGAGCAGGGGATCCCAAGCCTCTGGCAGTTTCTGGTGGAGTATCTCCTAATTCAAAGGAAAAAGTGTCAAGGCTACAGAACTTCCAGTTGGATAATATTATATTAGAGTCTATTATCAAGTTGAAGGAGCCGAAGGGTTCCGACAGGGCAGCAATTGCTTCATATATAGAGGATCAATACTGTTCTACACCAACCCTCAGAAAGTTACTGTCAACAAAACTGAAGCACATGGTGGCAAGTGGAAAATTAATGAAGGTAAAGCATAAGTACAGGATTGCAACAAATTTAACTATATCTGAGAAAAGAAGATGTTCTTCCTTGTTACTCCTGGAAGGAAGACCCAAAGATTCTCCAAAAACTGAGAAGACTGGTGTCAACATTCTTTCAAAATCCGAAATTGATGCAGAGCTATCTAAAATGAAGGGTGTGACACCACAAGAAGCAGCAGCTGCTGCTGCAAAGGCAGTTGCTGAGGCGGAAGCTGCCATTGCCGAAGCTGAGGCAGCAGCTAGGGAGGCAGACGCTGCAGAAGCCGAGGCAGAGGCTGCACGAGTGTTTGCAAAAGCAGCAATAAAGGCTCTAAAATGCAAGACGCTTCACATTTGA 897 0.447 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSSILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLLPSPKIDNNHMALSTAVQRDRGAGDPKPLAVSGGVSPNSKEKVSRLQNFQLDNIILESIIKLKEPKGSDRAAIASYIEDQYCSTPTLRKLLSTKLKHMVASGKLMKVKHKYRIATNLTISEKRRCSSLLLLEGRPKDSPKTEKTGVNILSKSEIDAELSKMKGVTPQEAAAAAAKAVAEAEAAIAEAEAAAREADAAEAEAEAARVFAKAAIKALKCKTLHI* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0502 298 SUPERFAMILY "Winged helix" DNA-binding domain 124 200 IPR036390 -
Vra11g0502 298 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Vra11g0502 298 MobiDBLite consensus disorder prediction 93 115 - -
Vra11g0502 298 CDD SANT_TRF 6 57 - -
Vra11g0502 298 Pfam linker histone H1 and H5 family 128 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra11g0502 298 Gene3D - 2 59 - -
Vra11g0502 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Vra11g0502 298 Gene3D - 123 221 IPR036388 -
Vra11g0502 298 SMART h15plus2 121 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra11g0502 298 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 115 191 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra11g0502 298 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Vra11g0502 298 PANTHER SINGLE MYB HISTONE 4 1 298 IPR044597 GO:0003691
Vra11g0502 298 Coils Coil 246 280 - -
Vra11g0502 298 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Vra11g0502 298 PANTHER MYB TRANSCRIPTION FACTOR 1 298 - -
Vra11g0502 298 SMART sant 4 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0502 Vra-Chr11 3793736 3798644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0502 1 294 Single Myb Histone (SMH) Gene Family AT5G67580 54.576 5.64e-76 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra11g0502 Linker_histone 9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0502 K09422 - gmx:778165 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0502 11 3793736 3798644 Vra7g1239 7 28806567 28814398 PCT