Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0490 ATGAAGCCTGTAGAAAATCGCGAAACCGTTGACATAAACTATCAAAATAGCTGCTTAGGTTTCTCCCTCTCCCCGCAAATGAATATAACTGGTGCTGCTGCTGAAACAGTTCCACCAACGTATTACCACCACACACCTCTTCATAACTATGGACTCCTAGGTGAACATGTTGGAATGTTTTCTTCCTTGCCTATCATGCCCCTTAAATCCAATGTCTCCTTCTATGGAATAGAAGCTATCAGCAGGTCACAACCACAAGAAATGGCAACTACTTCGGCAATACCTCTGAGCTTGGATAGTATGTTTTACAACCAACTCTCGTGTCATGGATCGAACGATCCAAATAACGAAAACCATGTACAAGAGAACATCAGCAAGCAACAGCTACCATATTATTCTTCCTTAAGAAACAACCATGATGTTATTTTAGAAGGGTCTAAGCAGCAACTCCCTTGTATAGCTGAGGATGAAGTTGCTTGTCTGAAAAGTTGGTTCTCAAGGGACTTTCCTGCTTGTCAAGCGCAGGAGTCAAGGATGTTTGTTCCTTTGGAGGATAATGGAAGCAAATCTGGACCCAATATTGGATCAATAACATATGAGGATTTACATTCGTTGAATTTGTCTGTGAGCCCTACCAGACGATCTAGCTGTGTTACAGGTTCGCCTGCTATCAATGATACGAAGAAAAGGGGGCTTGAAATGGTGGACCAGAATCAGAAGAAAATAGTACATAGGAAATCCATAGACACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTCTGGGACAACAGCTGCAAGAAAGAGGGCCAAGGAAGGAAAGGAAGGCAAGTGTATCTGGGGGGTTATGATATGGAAGAAAAAGCTGCAAGAGCTTACGACATGGCCGCACTCAAGTATTGGGGACCCTCCTCTCATATAAATTTCCCTTTGGAAAATTATCAAAACGAACTTGAGGAAATGAAAAACATGACGAGACAAGAATATGTTGCTCATTTACGAAGGAAAAGCAGCGGATTCTCAAGAGGAGCATCCATGTATAGAGGAGTAACAAGGCACCATCAACATGGAAGGTGGCAAGCTCGAATTGGGAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGCACCCAAGAGGAAGCAGCAGAAGCCTATGATATTGCTGCCATTAAATTCAGAGGAGTTAATGCTGTTACTAACTTTGATATAACAAGATATGACGTGGAAAAAATTATGGCAAGCGATAACCTTCTTAGCAGTGAACAAGCCAAGAGGAGCAGAGAGAAGGAGGATGGAACAAGAAACGAGGCCTTCTCTAACCAAAATCCTTGTGTATATGAACACAATAAAGAAACCATTGTAATGCAGAAAAGCTGCAAGATGGTTCCCTATCCCCCCCACCAACAGCTTGACCAGAATCCACCAAGAATCGAGAGTTGCAGAACTCATTCCTTCTCAACGGCTTTAAATAACATATTTCATCAAGAAGTAGAGGAATCGAGTAACATGGGAACACACTTGTCAAATCCTTCTTCTCTGGTGACAAGTTTGAGTAGCTCAAGAGAAGAGAGCCCAGATAAGACAAGCTTGCCAATGCTCTTTGGAATGCCTTCAACAGTGTCTAAATTATTCACTAACATTCCAACGAGTGACGGGGATTCTTGGGAGCTATCGTCCAATCTCAGGCCAGCTCTTTCTTTGCCTCAGATGCCAATTTTTGCTTCCTGGACCGATGCCTAA 1785 0.4269 MKPVENRETVDINYQNSCLGFSLSPQMNITGAAAETVPPTYYHHTPLHNYGLLGEHVGMFSSLPIMPLKSNVSFYGIEAISRSQPQEMATTSAIPLSLDSMFYNQLSCHGSNDPNNENHVQENISKQQLPYYSSLRNNHDVILEGSKQQLPCIAEDEVACLKSWFSRDFPACQAQESRMFVPLEDNGSKSGPNIGSITYEDLHSLNLSVSPTRRSSCVTGSPAINDTKKRGLEMVDQNQKKIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQGRKGRQVYLGGYDMEEKAARAYDMAALKYWGPSSHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVEKIMASDNLLSSEQAKRSREKEDGTRNEAFSNQNPCVYEHNKETIVMQKSCKMVPYPPHQQLDQNPPRIESCRTHSFSTALNNIFHQEVEESSNMGTHLSNPSSLVTSLSSSREESPDKTSLPMLFGMPSTVSKLFTNIPTSDGDSWELSSNLRPALSLPQMPIFASWTDA* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0490 594 MobiDBLite consensus disorder prediction 517 547 - -
Vra11g0490 594 Pfam AP2 domain 360 409 IPR001471 GO:0003700|GO:0006355
Vra11g0490 594 Pfam AP2 domain 257 315 IPR001471 GO:0003700|GO:0006355
Vra11g0490 594 SUPERFAMILY DNA-binding domain 358 418 IPR016177 GO:0003677
Vra11g0490 594 MobiDBLite consensus disorder prediction 433 457 - -
Vra11g0490 594 Gene3D AP2/ERF domain 359 419 IPR036955 GO:0003700|GO:0006355
Vra11g0490 594 Gene3D AP2/ERF domain 256 325 IPR036955 GO:0003700|GO:0006355
Vra11g0490 594 ProSiteProfiles AP2/ERF domain profile. 257 323 IPR001471 GO:0003700|GO:0006355
Vra11g0490 594 CDD AP2 358 419 IPR001471 GO:0003700|GO:0006355
Vra11g0490 594 MobiDBLite consensus disorder prediction 517 541 - -
Vra11g0490 594 CDD AP2 256 323 IPR001471 GO:0003700|GO:0006355
Vra11g0490 594 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 592 - -
Vra11g0490 594 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 14 592 - -
Vra11g0490 594 PRINTS Ethylene responsive element binding protein signature 258 269 IPR001471 GO:0003700|GO:0006355
Vra11g0490 594 PRINTS Ethylene responsive element binding protein signature 399 419 IPR001471 GO:0003700|GO:0006355
Vra11g0490 594 SUPERFAMILY DNA-binding domain 256 325 IPR016177 GO:0003677
Vra11g0490 594 SMART rav1_2 359 423 IPR001471 GO:0003700|GO:0006355
Vra11g0490 594 SMART rav1_2 257 329 IPR001471 GO:0003700|GO:0006355
Vra11g0490 594 MobiDBLite consensus disorder prediction 436 450 - -
Vra11g0490 594 ProSiteProfiles AP2/ERF domain profile. 359 417 IPR001471 GO:0003700|GO:0006355
Vra11g0490 594 Coils Coil 324 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0490 Vra-Chr11 3685129 3688945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0490 11 594 AP2-EREBP Transcription Factor Family AT4G37750 43.008 8.82e-145 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vra11g0490 AP2 5.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0490 K09285 - gmx:100794433 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0490 11 3685129 3688945 Vra7g1258 7 29077274 29081140 PCT