Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0485 ATGGGTTTTGATCACGATGCCAGTACCTCTGGCCTTCATCTCGTTCTAGGGTTATCTTTGACTGCTACCACCACTCCATCTACCAAGCCTCAAGATCATCATCATCGTCATCATCATTTTTGTGTTGTTAAGCCTTCTCCAACCAAGCCTAATTCCCCCAATGAACCATCTTTGACGTTGGGTTTGTCTGGCGATACCTGCCACCTAGCCAAGCAAGTGCCTAACAACAGTAAGGTTTATTGTGAGGACCCTCTTGACATGTCTAGACAGACTTCACCTCACAGCGTGGTTTCGTCTTTCTCAACTGGGAGGGTTGTGAAGAGGGAGAGAGATCTTAGCTTTGAAGAGGTAGAGGCAGAGGCAGAGGCAGACGAGAGGGTTTCTTCAAGAGTGAGCGACGAAGAAGAAGACGGCACCAATGCTAGGAAGAAACTCAGACTCACCAAAGAACAATCTGCACTACTGGAGGAGAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTAGCCAGACAGTTAAATCTACGGCCTCGACAAGTTGAAGTGTGGTTTCAGAATCGGAGAGCCAGAACAAAGCTGAAGCAGACAGAGGTGGACTGTGAGTTCTTGAAGAAATGCTGTGAAACGTTGACGGACGAAAACAGAAGGTTAAAGAAGGAGCTGCAGGAGCTGAAGGCACTGAAACTAGCTCAACCCTTGTACATGCCTATGCCTGCGGCAACACTCACCATGTGCCCTTCTTGCGAGAGGCTCGGTGGCGTTAGCGATAACGCTTCCAATAAAAGCCCTTTCTCCATGGCTCCCAAGACTCACTTCTACAACCCCTTTGCCAATCCTTCTGCAGCATGTTGA 864 0.4826 MGFDHDASTSGLHLVLGLSLTATTTPSTKPQDHHHRHHHFCVVKPSPTKPNSPNEPSLTLGLSGDTCHLAKQVPNNSKVYCEDPLDMSRQTSPHSVVSSFSTGRVVKRERDLSFEEVEAEAEADERVSSRVSDEEEDGTNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLAQPLYMPMPAATLTMCPSCERLGGVSDNASNKSPFSMAPKTHFYNPFANPSAAC* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0485 287 MobiDBLite consensus disorder prediction 111 146 - -
Vra11g0485 287 Gene3D - 146 196 - -
Vra11g0485 287 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 7 287 - -
Vra11g0485 287 PANTHER - 7 287 - -
Vra11g0485 287 MobiDBLite consensus disorder prediction 123 146 - -
Vra11g0485 287 CDD homeodomain 142 199 IPR001356 GO:0003677
Vra11g0485 287 MobiDBLite consensus disorder prediction 24 57 - -
Vra11g0485 287 SMART HOX_1 140 202 IPR001356 GO:0003677
Vra11g0485 287 SUPERFAMILY Homeodomain-like 135 199 IPR009057 -
Vra11g0485 287 SMART halz 198 241 IPR003106 GO:0006355|GO:0043565
Vra11g0485 287 Pfam Homeodomain 142 196 IPR001356 GO:0003677
Vra11g0485 287 Coils Coil 204 234 - -
Vra11g0485 287 ProSitePatterns 'Homeobox' domain signature. 173 196 IPR017970 GO:0000981|GO:0006355
Vra11g0485 287 ProSiteProfiles 'Homeobox' domain profile. 138 198 IPR001356 GO:0003677
Vra11g0485 287 Pfam Homeobox associated leucine zipper 198 232 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0485 Vra-Chr11 3617078 3618773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0485 1 287 Homeobox Transcription Factor Family AT4G37790 58.528 2.71e-94 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra11g0485 Homeodomain 1.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0485 K09338 - gmx:100784129 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0485 11 3617078 3618773 Vra7g1264 7 29200016 29201496 PCT