LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra11g0478	ATGCCTCAGCCATTGTTTCTGTTTTTACTTTTATCTACATTGTTCTCAAGTGGTTTATCCCAAACGGTTTCCCTCCAAAGAGAGTCTCGAATTTTACTTCGGGTTAAGAACACCCAGCTTGAAGACAAAAACAAGAGTCTCCAAGACTGGGTACCAAACACAGACCACAACCCCTGCAACTGGACCGGCATTACCTGCGACGCACAAAACCATTCACTTGTCTCCATTGACCTCTCAGAAGTTGGAATCTACGGTGAGTTCCCCTTCGGTTTTTGTCGCATTCACACCCTCCAAAACCTCTCTCTCGCATTCAATTTTCTCTCCAATTCTCTCTCCCCCAACTCCCTGCTCCTCTGCTCCCACCTCCGTCTCTTGAACCTCTCCGACAATTTATTCGTTGGAGACCTGCCGGAATTCACGCCAAAGTTCACCGAACTAAGGGTGTTAGACCTTTCGAAAAACAACTTCACTGGCAACATTCCGGGGAGTTTTGGACAGATTTCACGTCTGAGAGTGCTCGTTTTATGCGGCAACCTTCTGAGCGGAACCATCCCTCCCTCTTTAGGCAATCTCAGTGAGTTAACTCGTTTGGAACTAGCTTATAACCCCTTCAAACCAGGACCGTTGCCTCCCCAACTAGGAAACCTAATTAGTCTTGAAACACTGTTCCTCGCTGCTGTTAACCTCGTAGGGGAAATTCCACCCACTATCGGTAACCTCACCTCGCTCAAAAACTTGGACTTATCAAAAAATGGTTTGTCTGGTAATATCCCAAACAGCATTTCAGGTCTGAAAAACGTTGAACAAATCGAACTATTTGAAAACCAGCTTTCCGGTGAATTACCCCAAGGTTTAGGAAACCTCAGTAGTTTAATTCTCTTGGACCTCTCTCAGAACGCTCTCAGCGGGGAACTACCACATGCAATCGCCTCTTTGCGTCTCTATTCTCTCAATCTAAATGACAACCTTCTCGGGGGGGAAATTCCTGAAATTTTAGCTTCAAATCCCAACCTGTATCAACTGAAACTCTTCAACAACAGCTTCACCGGGAAACTTCCACAAGATCTGGGACAAAACTCAGACATACAGGAATTCGATGTCTCCACGAATGACTTCGTGGGAGAGTTGCCAAAGTACCTCTGCAAGAGAAACAAACTCGAGCGTCTCATCACGTTCGCAAATCGCTTCTCAGGAACGCTCCCTGAGCAATATGGGGAGTGTGATTCTCTTCAGTATGTCAGAATCCAGAACAACCAGTTATCAGGCCAGGTGCCTCCAGCTTTTTGGGCCCTTACAGGGCTTCAGTTTCTTGAAATGTCCAACAACAGGTTTGAAGGTTCTGTCTCTGCTTCCATCTCTGTGGCATTCACCAAGCTCATTTTGTCTGCTAACAATTTTTCTGGCAAATTCCCAACGCGAATCTGCCAACTCCCTCACCTTCTGGAGATTGACGTCAGCAAGAACCACTTCACCGGTGAAGTTCCCACGTGCATAACTGGGTTGAAAAAGTTACAGAAACTTAAGATGCAAGAGAATATGTTCACCGGCGAAATACCCAGTAACGTAGCCCTCTGGAAGGACATGACAGAGTTGAACCTGTCATTTAACCAATTTTCCGGTTCAATCCCGCGAGAACTTGGCAGTTTACACGATTTGACAAACCTTGATCTCGCCAGTAATTCTTTAACGGGGGAGATTCCGGTGGAGTTGACGAACCTCAGACTCAACCAGTTCAACGTCTCTGATAACAATCTTTACGGGGAGGTTCCTTCAGGTTTCAACCACCAAATGTACTTTTCCAGTCTAGAGGGAAACCGGGGTCTGTGCAGCGGCGTTATCAAAACCCTACCTCCTTGTTCGAAACGCAGGCCGTTTTCTCTACTTGCGATTGTCGTTTTAGTTGCCTGCGCTTCGCTCGTTGTGGGGTCCATGTTGTGGTACCTGAAGAGCAAGACGCGCCGTAAATCCAAGCGCTCGTATTTGTCAACCGCGTTTCAGAGGGTTGGGTTCAATGAAGAAGAAATTATTTCAAACTTAACCAGGGAGAACGTTATTGGAGCAGGGAGTTCGGGTCGGGTCTATAGGGTGAGGCTGAAAACGGGGCAAACGGTGGCAGCGAAGAAGCTGTTCGGCGGAGTGCATAAGCCTGACACTGAATTGGTGTTCAGGGCGGAGATTGAGACGTTGGGTAGGATTCGGCATGCCAATATTGTGAAATTGTTGTTTTGTTGCAGCGATGATGAGTTTAGGGTATTGGTGTACGAGTACATGGAGAACGGGAGCTTAGGGGATGTGTTGCATGGTGAGGAAATGTGTGGGGAGTTGATGGAGTGGTCTAAAAGGTTCGCAATTGCGGTGGGTGCGGCTAAGGGGTTGGCTTATTTACACCATGATTGTGTGCCGCCAATTGTTCACAGGGATGTGAAGAGTAATAACATTTTGCTGGACCACGAGTTTGTGCCCAGAGTTGCAGACTTTGGCCTCGCTAAGACATTGCAGCTTGAGACAACCCAGGGTGCTGTTATGTCCAAGGTTGCCGGATCATATGGCTACATTGCTCCAGAGTATGGTTATACAATGAAAGTGAACGAGAAGAGCGATGTGTATAGTTTTGGGGTTGTGCTGATGGAATTGATCAGCGGGAAGAGGCCAAATGACTGTTCATTTGGCGAGAACAAGGATATAGTGAAATGGATGACTGAGATTGTTTTATCAGCGTCTTGTGAAAGAGGAAGTGACAATGTGGGAGGAGGTAAAGATTATATTATGAGCAAGATTGTGGACCCAAGATTGAACACAAGCACTTGTGACTATGAAGAGGTTGAGAAGGTTTTAAATGTGGCCCTACTCTGCACCTCAGCATTTCCCATTAATAGACCTTCCATGAGAAGGGTGGTTGAATTGCTCAAGGACCATAAACTGCCATGA	2928	0.4662	MPQPLFLFLLLSTLFSSGLSQTVSLQRESRILLRVKNTQLEDKNKSLQDWVPNTDHNPCNWTGITCDAQNHSLVSIDLSEVGIYGEFPFGFCRIHTLQNLSLAFNFLSNSLSPNSLLLCSHLRLLNLSDNLFVGDLPEFTPKFTELRVLDLSKNNFTGNIPGSFGQISRLRVLVLCGNLLSGTIPPSLGNLSELTRLELAYNPFKPGPLPPQLGNLISLETLFLAAVNLVGEIPPTIGNLTSLKNLDLSKNGLSGNIPNSISGLKNVEQIELFENQLSGELPQGLGNLSSLILLDLSQNALSGELPHAIASLRLYSLNLNDNLLGGEIPEILASNPNLYQLKLFNNSFTGKLPQDLGQNSDIQEFDVSTNDFVGELPKYLCKRNKLERLITFANRFSGTLPEQYGECDSLQYVRIQNNQLSGQVPPAFWALTGLQFLEMSNNRFEGSVSASISVAFTKLILSANNFSGKFPTRICQLPHLLEIDVSKNHFTGEVPTCITGLKKLQKLKMQENMFTGEIPSNVALWKDMTELNLSFNQFSGSIPRELGSLHDLTNLDLASNSLTGEIPVELTNLRLNQFNVSDNNLYGEVPSGFNHQMYFSSLEGNRGLCSGVIKTLPPCSKRRPFSLLAIVVLVACASLVVGSMLWYLKSKTRRKSKRSYLSTAFQRVGFNEEEIISNLTRENVIGAGSSGRVYRVRLKTGQTVAAKKLFGGVHKPDTELVFRAEIETLGRIRHANIVKLLFCCSDDEFRVLVYEYMENGSLGDVLHGEEMCGELMEWSKRFAIAVGAAKGLAYLHHDCVPPIVHRDVKSNNILLDHEFVPRVADFGLAKTLQLETTQGAVMSKVAGSYGYIAPEYGYTMKVNEKSDVYSFGVVLMELISGKRPNDCSFGENKDIVKWMTEIVLSASCERGSDNVGGGKDYIMSKIVDPRLNTSTCDYEEVEKVLNVALLCTSAFPINRPSMRRVVELLKDHKLP*	976

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra11g0478	975	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE HSL2	6	973	-	-
	Vra11g0478	975	ProSitePatterns	Protein kinases ATP-binding region signature.	685	708	IPR017441	GO:0005524
	Vra11g0478	975	SUPERFAMILY	Protein kinase-like (PK-like)	670	969	IPR011009	-
	Vra11g0478	975	SUPERFAMILY	L domain-like	313	609	-	-
	Vra11g0478	975	Pfam	Leucine rich repeat N-terminal domain	28	67	IPR013210	-
	Vra11g0478	975	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	803	815	IPR008271	GO:0004672\|GO:0006468
	Vra11g0478	975	Pfam	Protein kinase domain	681	892	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra11g0478	975	Pfam	Leucine rich repeat	145	203	IPR001611	GO:0005515
	Vra11g0478	975	Gene3D	Transferase(Phosphotransferase) domain 1	757	974	-	-
	Vra11g0478	975	Gene3D	Phosphorylase Kinase; domain 1	662	756	-	-
	Vra11g0478	975	SUPERFAMILY	L domain-like	55	371	-	-
	Vra11g0478	975	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED	6	973	-	-
	Vra11g0478	975	ProSiteProfiles	Protein kinase domain profile.	679	975	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra11g0478	975	SMART	serkin_6	679	975	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra11g0478	975	Pfam	Leucine Rich Repeat	242	264	IPR001611	GO:0005515
	Vra11g0478	975	Gene3D	Ribonuclease Inhibitor	25	182	IPR032675	-
	Vra11g0478	975	Gene3D	Ribonuclease Inhibitor	294	622	IPR032675	-
	Vra11g0478	975	Gene3D	Ribonuclease Inhibitor	183	284	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra11g0478	Vra-Chr11	3561847	3565873	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra11g0478	23	973	Receptor kinase-like Gene Family	AT5G65710	56.629	0.0	1048

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-1	Vra11g0478		Pkinase	1.7e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra11g0478	-		-	gmx:100813889	1531.92