Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0477 ATGCGTGTCCTCTTTCTATTTCTGTTTCTGTTTTTCCATGTTCATCAAACCCTTTCGTTGCCATTCTCAGAGTACAATGCCCTTAGCTCCATTCGTTCAGCCATTACCGATGCCACTCCACCCGTTCTCTCTTCTTGGAATGCTTCCACCTCTTACTGTTCCTGGCTCGGCGTCACATGCGATGCTCACCGCCACGTTGTCGCTCTCAACCTCACCGGACTCCATCTCTCCGGGACTCTCTCCGCCGACGTAGCTCACCTCCCATTCCTCTCCAATCTCTCCCTCGCCGACAATAAGTTCTCCGGCCCCATTCCTCCGGCTCTCTCCTCCCTCTCTGCCCTCCGCCTCCTCAACCTCTCTAACAATGCCTTTAACCAAACCTTTCCCCCGGAGCTCTCGCGCCTCCAGAGCCTCGAGGTCCTCGACCTCTACAACAACAACATGACCGGCGCACTCCCTCTCGCCGTCGCGCAGATGCTTAACCTCCGCCACTTGCATCTCGGCGGCAACTTCTTCTCCGGCCGGATCCCGCCGGAGTACGGACGGTGGCCGCGCCTCCAGTACCTCGCTGTCTCCGGCAACGAGCTCGGCGGGAAAATACCGCCGGAGATCGGGAACCTGACCAGCCTCCGGGAGCTCTACATCGGTTACTACAACACCTACGTGGACGGCATTCCGCCGGAGATCGGGAACTTGTCAGAGTTGGTGAGGTTGGACGCTGCGTACTGTGGTTTGTCCGGCGAGATTACACCGGCGCTGGGTAAGCTGCAGAAGCTGGACACGCTGTTCCTTCAGGTGAATGCGCTAACAGGGCCTCTGACGCCGGAGCTGGGGAACCTGAAGAGCCTGAAATCGATGGATTTGTCTAACAACATGCTCTCTGGCGAGATTCCGGCGACTTTCAGCGAGCTCAAGAATATTACGCTGCTGAACCTGTTCAGGAACAAGCTTCACGGAGCAATACCGGAGTTTATAGGGGACCTTCCGGCACTGGAAGTGGTGCAACTGTGGGAAAACAACTTCACAGGTAGCATTCCCGAGGGTTTAGGCAAGAACGGGAGACTGAACGTTGTTGATCTTTCTTCTAACAAATTAACCGGGACTTTGCCTCCTTATCTCTGTTCTGGGAACACCCTTCAGACTTTGATTACTCTCGAGAATTTCTTGTTCGGTCCAATTCCGGAATCGCTTGGGAGTTGTGAACCCCTTACTCGGATTCGAATGGGAGAGAACTTTCTAAATGGGTCCATTCCGAAAGGGCTTTTTGGACTTCCCAAACTGACCCAGGTTGAGCTTCAGGATAATTATCTCTCTGGAGAGTTTCCGGAGACGGGCTCTGTAGCTGTTAATCTTGGTCAGATAACTCTCTCCAACAATCAGCTTTCTGGGGCTTTGCCTCCTTCTATTGGTAACTTCTCCGGCGTGCAGAAGCTCCTTCTTGACGGTAACATGTTTTCGGGTCGGATACCTCCACAGATTGGGAAGTTGCAACAGCTCTCAAAGATTGATTTTAGTGGCAACAAGTTCTCGGGTCCTATTTCACCTGAGATCAGTCAGTGTAAGTTGTTGACTTTTCTGGACCTTAGCCGCAATGAGCTTTCCGGAGAGATCCCAAATGAGATTACTGGAATGAGGATCTTGAATTACCTTAATCTCTCAAGTAATCATTTAGTGGGTAGCATTCCCTCTTCAATATCCTCGATGCAAAGCTTAACTTCTGTTGATTTTTCGTACAACAATCTGTCTGGTTTGGTGCCTGGTACGGGTCAGTTCAGCTACTTCAACTACACGTCTTTCCTGGGAAACCCTGACCTCTGTGGTCCCTATTTAGGTGCTTGCAAGGATGGGGTTGCCAATGGTGCACATCAACCTCATGCTAAAGGACTCTCGTCTTCCTTGAAGCTTCTACTTGTTGTCGGTTTGCTTTTATGTTCCATTGCTTTTGCTGTGGCGGCAATATTTAAGGCTCGATCACTGAAGAAGGCCAGTGAGGCTCGTGCATGGAAGTTGACTGCATTCCAACGTTTGGACTTCACTGTTGATGATGTTTTGCATTGCTTGAAGGAGGACAATATTATAGGCAAAGGAGGTGCAGGCATTGTCTACAAAGGGGCTATGCCTAACGGGGATCATGTTGCCGTGAAAAGGCTTCCCGCTATGAGTAGAGGTTCTTCCCACGACCACGGGTTCAATGCGGAGATTCAGACACTTGGTCGAATCCGACACAGGCACATTGTTAGACTGCTGGGTTTCTGTTCAAATCATGAGACTAACCTTTTGGTCTATGAGTACATGCCCAATGGAAGCTTGGGTGAGGTTCTTCATGGAAAGAAGGGAGGTCATTTGTATTGGGACATAAGGTATAAAATAGCCGTGGAAGCCGCCAAAGGGCTTTGCTATCTGCACCATGATTGTTCTCCGCTCATTGTTCACCGTGATGTGAAGTCAAACAACATCCTTCTTGATTCTAATCATGAAGCTCATGTTGCTGATTTTGGGCTAGCCAAGTTCCTGCAAGATTCTGGGACATCTGAATGCATGTCTGCTATTGCTGGTTCATACGGATACATAGCTCCGGAGTATGCCTACACATTGAAAGTTGATGAGAAAAGCGACGTGTACAGTTTTGGCGTGGTTCTTTTAGAACTTGTAACTGGCAGGAAACCAGTTGGGGAATTTGGTGACGGTGTAGACATTGTGCAATGGACAAGGAAAATGACGGACTCTAACAAGGAAGAAGTTCTTAAAGTTCTTGATCCTAGGCTTTCGTCGGTTCCCCTCCACGAAGTGATGCATGTTTTCTATGTAGCCATGCTATGTGTTGAAGAACAGGCTGTAGAGAGACCAACTATGCGTGAAGTTGTCCAAATACTAACAGAGCTTCCAAAGGCACCTGGTTCTAAACAGGAGGACTTAACAGAATCCTCTCTGACATCATCCAATGCTTTAGAATCTCCATCCACAGCCTCTAGGGATCATCAAAATCCTTCTCAATCTCCACCAGCCGATCTTCTTAGCATCTGA 3024 0.494 MRVLFLFLFLFFHVHQTLSLPFSEYNALSSIRSAITDATPPVLSSWNASTSYCSWLGVTCDAHRHVVALNLTGLHLSGTLSADVAHLPFLSNLSLADNKFSGPIPPALSSLSALRLLNLSNNAFNQTFPPELSRLQSLEVLDLYNNNMTGALPLAVAQMLNLRHLHLGGNFFSGRIPPEYGRWPRLQYLAVSGNELGGKIPPEIGNLTSLRELYIGYYNTYVDGIPPEIGNLSELVRLDAAYCGLSGEITPALGKLQKLDTLFLQVNALTGPLTPELGNLKSLKSMDLSNNMLSGEIPATFSELKNITLLNLFRNKLHGAIPEFIGDLPALEVVQLWENNFTGSIPEGLGKNGRLNVVDLSSNKLTGTLPPYLCSGNTLQTLITLENFLFGPIPESLGSCEPLTRIRMGENFLNGSIPKGLFGLPKLTQVELQDNYLSGEFPETGSVAVNLGQITLSNNQLSGALPPSIGNFSGVQKLLLDGNMFSGRIPPQIGKLQQLSKIDFSGNKFSGPISPEISQCKLLTFLDLSRNELSGEIPNEITGMRILNYLNLSSNHLVGSIPSSISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGACKDGVANGAHQPHAKGLSSSLKLLLVVGLLLCSIAFAVAAIFKARSLKKASEARAWKLTAFQRLDFTVDDVLHCLKEDNIIGKGGAGIVYKGAMPNGDHVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLYWDIRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNHEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWTRKMTDSNKEEVLKVLDPRLSSVPLHEVMHVFYVAMLCVEEQAVERPTMREVVQILTELPKAPGSKQEDLTESSLTSSNALESPSTASRDHQNPSQSPPADLLSI* 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0477 1007 MobiDBLite consensus disorder prediction 969 1007 - -
Vra11g0477 1007 Gene3D Transferase(Phosphotransferase) domain 1 765 982 - -
Vra11g0477 1007 Pfam Leucine Rich Repeat 282 304 IPR001611 GO:0005515
Vra11g0477 1007 Pfam Leucine Rich Repeat 161 178 IPR001611 GO:0005515
Vra11g0477 1007 Pfam Protein tyrosine and serine/threonine kinase 689 958 IPR001245 GO:0004672|GO:0006468
Vra11g0477 1007 Gene3D Phosphorylase Kinase; domain 1 653 764 - -
Vra11g0477 1007 SMART LRR_typ_2 328 352 IPR003591 -
Vra11g0477 1007 SMART LRR_typ_2 353 376 IPR003591 -
Vra11g0477 1007 SMART LRR_typ_2 280 304 IPR003591 -
Vra11g0477 1007 SMART LRR_typ_2 568 591 IPR003591 -
Vra11g0477 1007 SMART LRR_typ_2 159 183 IPR003591 -
Vra11g0477 1007 SMART LRR_typ_2 111 135 IPR003591 -
Vra11g0477 1007 ProSiteProfiles Protein kinase domain profile. 687 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0477 1007 SUPERFAMILY L domain-like 353 610 - -
Vra11g0477 1007 Gene3D Ribonuclease Inhibitor 342 617 IPR032675 -
Vra11g0477 1007 MobiDBLite consensus disorder prediction 963 1007 - -
Vra11g0477 1007 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 3 997 - -
Vra11g0477 1007 Pfam Leucine rich repeat N-terminal domain 24 61 IPR013210 -
Vra11g0477 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 809 821 IPR008271 GO:0004672|GO:0006468
Vra11g0477 1007 SMART serkin_6 687 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0477 1007 SUPERFAMILY RNI-like 69 411 - -
Vra11g0477 1007 Gene3D Ribonuclease Inhibitor 275 341 IPR032675 -
Vra11g0477 1007 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 3 997 - -
Vra11g0477 1007 Gene3D Ribonuclease Inhibitor 177 274 IPR032675 -
Vra11g0477 1007 Gene3D Ribonuclease Inhibitor 22 176 IPR032675 -
Vra11g0477 1007 SUPERFAMILY Protein kinase-like (PK-like) 683 958 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0477 Vra-Chr11 3542798 3546973 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0477 17 986 Receptor kinase-like Gene Family AT5G65700 80.836 0.0 1594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra11g0477 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0477 - - gmx:548032 1807.34