Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0476 ATGATGGAAATCGCCTCCACCAATTACTTGCCTGAACTTGAAATGGAGTATCCAACCTTTCTTGATCAGTACCAGATGGATTCTTTTGCATGCCCTCTCAATGATTTTGACTTCGAGTCTTTCTCCGGATCCCCAGAGAGCAATTCATCTTATCAGCTAAACTCTGAAACCATTCTAAATTGTTTCCCAGCTCAAAGTCCTGATCGGTCATTTACCCCTCCAAGACCAACCAAGAGGCTCAAGAACACATTCAATACCTTCAAAACTTGTGCCGGTGACTCAATTTCCCACAATGTTTCCGCTTCTCCTTCCTCCCAACTCATTTCTTTTGGCCACAACTTCCATCTAAAGCCTAAAAGCGAAAACCCGTCCAGTGAGAACATGGACTTTACAGACTTCGTTTCTCAAGGTTCATATCAGGACAAAACTTTCTTCAGTTCTGATAATCGAACCAACCAGGTTGGCTTAACCACTAGGAACCCAATCCAAGCCCAAGAGCACGTAATAGCTGAAAGAAAACGAAGGGAAAAGCTCAGCCAGAGGTTCATCGCTCTTTCTGCCGTCCTCCCTGGCCTCAAGAAGATGGACAAGGCTTCCGTGTTGGGAGATGCTATCAAGTATGTGAAACAACTACGAGAGCGCGTGCAAAATCTAGAGGAGAAAACAGCGAAGATCACAACCGGTTCTTCAGTCCTGGTGAAAAGATCTATTCTCTTTGCTGACGGTGAAAATTCTGACAGCCACTGCGCCAATTCACTCCCTGAAATCGAAGTAAGAGTTTCTGGGAAAGACGTACTCATCAGAACTCAAAGCGATAAACACAGTGGGCGTGCGGCAGTGATACTCAGCGAATTAGAAAAGCTTCATTTCATTGTCCAGAGTAGCAGCCTTTTGCCCTTCGGAAATAACAATATTGACGTAACTATTATTGCTCAGATGAAGGAAAACTACATGGCAGCAAAGGATCTCCTGGGAAGGTTACGAAAGGCTTTGAAGCAAGTTGATGGAGCCTAA 1014 0.4458 MMEIASTNYLPELEMEYPTFLDQYQMDSFACPLNDFDFESFSGSPESNSSYQLNSETILNCFPAQSPDRSFTPPRPTKRLKNTFNTFKTCAGDSISHNVSASPSSQLISFGHNFHLKPKSENPSSENMDFTDFVSQGSYQDKTFFSSDNRTNQVGLTTRNPIQAQEHVIAERKRREKLSQRFIALSAVLPGLKKMDKASVLGDAIKYVKQLRERVQNLEEKTAKITTGSSVLVKRSILFADGENSDSHCANSLPEIEVRVSGKDVLIRTQSDKHSGRAAVILSELEKLHFIVQSSSLLPFGNNNIDVTIIAQMKENYMAAKDLLGRLRKALKQVDGA* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0476 337 Pfam Helix-loop-helix DNA-binding domain 165 212 IPR011598 GO:0046983
Vra11g0476 337 CDD bHLH_AtNAI1_like 164 236 - -
Vra11g0476 337 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 333 - -
Vra11g0476 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Vra11g0476 337 Coils Coil 201 228 - -
Vra11g0476 337 Gene3D - 157 227 IPR036638 GO:0046983
Vra11g0476 337 PANTHER BHLH TRANSCRIPTION FACTOR 1 333 - -
Vra11g0476 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 228 IPR036638 GO:0046983
Vra11g0476 337 SMART finulus 168 217 IPR011598 GO:0046983
Vra11g0476 337 Coils Coil 310 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0476 Vra-Chr11 3532669 3534838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0476 2 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.735 1.26e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra11g0476 HLH 4.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0476 - - var:108334767 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0476 11 3532669 3534838 Vra7g1272 7 29370840 29373667 PCT