Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0473 ATGGCTGCAGAGATTGGCCTAGTCTCCATGACCCAGATCCAAAAATTATCACAATCCCAACATCCCAAAAAACAACAACCTCAACCAAACCCTAACACCACAACCACAACCCCTTCTTCTTGGATGTGGAACCCTAGCCAACAACTGCACCACCAAGAAGACGACGATGACTCATGGGAGGTCAGAGCTTTTGCAGAAGACACAAGGAACATCATGGAAACCACATGGCCTCCACGCTCCTACACCTGCACATATTGCAGAAGGGAGTTCCGCTCCGCCCAAGCTCTCGGCGGCCACATGAACGTCCACCGCCGCGACCGTGCACGCCTCAACCAACCCTCTCCTTCCTCCACCGCCACCTCTTCTCTTCCCACTTCTTCACCCTACATCAACATCCCTCCTCAAGACCTTGTTGCAAATGCTGGGTTATGCCTCCTCTACCACTTACCACCAAGCCCTAGTGCACCACCCTTCTCTAATTCCCCCTCTACCAATACCCTTTCTTCTTCTCCCTCTCCCTCCACTCTTCTCTCTATCTCCTCCTATCCTTCAAGCAACTTTCTGATGCAAACTTCCTTTAATTTTCCCGGTGCACCCTCGACCGGGATCAACACTGCTGCTGTTTCCTCTTTCTACTCTAGCAAAGTGGAACAATCGGCAACTTCTTCCTCTTTCGCTACCGGCCACCTCGAAGAGCTTGATCTAGAGCTCCGCCTCGGCCACAAACCAACACAAACCTCATAA 744 0.5161 MAAEIGLVSMTQIQKLSQSQHPKKQQPQPNPNTTTTTPSSWMWNPSQQLHHQEDDDDSWEVRAFAEDTRNIMETTWPPRSYTCTYCRREFRSAQALGGHMNVHRRDRARLNQPSPSSTATSSLPTSSPYINIPPQDLVANAGLCLLYHLPPSPSAPPFSNSPSTNTLSSSPSPSTLLSISSYPSSNFLMQTSFNFPGAPSTGINTAAVSSFYSSKVEQSATSSSFATGHLEELDLELRLGHKPTQTS* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0473 247 SUPERFAMILY beta-beta-alpha zinc fingers 78 108 IPR036236 -
Vra11g0473 247 MobiDBLite consensus disorder prediction 155 175 - -
Vra11g0473 247 MobiDBLite consensus disorder prediction 1 57 - -
Vra11g0473 247 PANTHER OS07G0101800 PROTEIN 42 241 - -
Vra11g0473 247 PANTHER ZINC FINGER C2H2-TYPE/INTEGRASE DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 42 241 - -
Vra11g0473 247 Gene3D Classic Zinc Finger 71 126 - -
Vra11g0473 247 MobiDBLite consensus disorder prediction 159 175 - -
Vra11g0473 247 MobiDBLite consensus disorder prediction 10 48 - -
Vra11g0473 247 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Vra11g0473 247 SMART c2h2final6 81 103 IPR013087 -
Vra11g0473 247 MobiDBLite consensus disorder prediction 111 128 - -
Vra11g0473 247 Pfam C2H2-type zinc finger 81 105 - -
Vra11g0473 247 MobiDBLite consensus disorder prediction 97 128 - -
Vra11g0473 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0473 Vra-Chr11 3508481 3510107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0473 39 243 C2H2 Transcription Factor Family AT4G17810 40.865 6.58e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra11g0473 zf-C2H2_6 2.9e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0473 - - gmx:100818142 298.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0473 11 3508481 3510107 Vra11g0473 11 3508481 3510107 ECH
Vra11g0473 11 3508481 3510107 Vra7g1278 7 29477996 29479634 PCT