Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0472 ATGTCTATGGCTGGTTTGGATTTAGGCACGGCTTCGCGCTTCGTTCAAAGTCTCCAAAGACCCGACTTCAACCAACACCACCACCAGCACGAACCTGAGGAAGATGACAAACAGTCAGACCCTTTTTCGACCGAAGATGGGGCGCAACAAGCCAGCCCCGGCGACGTGGTAGGGCGGCGGCCGCGAGGGCGGCCGCCGGGATCGAAGAACAAGCCGAAGCCGCCGGTGATCATCACCAGGGAGAGCGCCAACACGCTACGTGCGCACATCCTCGAGGTGGGCAGCGGCTGCGACGTGTTCGACAGCGTGGCTAGTTACGCGCGGCGGCGGCAACGCGGGATCTGTATTTTAAGCGGCAGCGGCACCGTGACGAATGTGACCCTGCGGCAGCCGGCGGCGTCGGGGGCGGTGGTGACTCTTCACGGGAGGTTCGAAATACTGTCGCTGGCGGGATCTTTCCTTCCTCCGCCGGCGCCACCGGGAGCGACAAGTCTGAGCGTATACCTTGCCGGAGGACAAGGGCAGGTGGTGGGTGGGAGTGTGGTGGGAGAGTTGACAGCGGCGGGACCGGTGATCGTGATCGCAGCGTCGTTCACCAACGTGGCTTATGAACGGTTACCGTTAGAAGAAGAAGAGGAACAGGTTCAGATATCTGGTGGTGGTGCCGGCGTGGGAAATAATAGTAATAATATTATTAACAATAACCCTTTTCCCGATCCTTCTTCGGGACTCCCTTTCTTCAGTTTGCCCATGAATGTTCAGTTCCCGGTGGATGGTTGGGCGGGAAACTCAGGTTCACGTTCACCATTTTGA 813 0.5855 MSMAGLDLGTASRFVQSLQRPDFNQHHHQHEPEEDDKQSDPFSTEDGAQQASPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGSGCDVFDSVASYARRRQRGICILSGSGTVTNVTLRQPAASGAVVTLHGRFEILSLAGSFLPPPAPPGATSLSVYLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLEEEEEQVQISGGGAGVGNNSNNIINNNPFPDPSSGLPFFSLPMNVQFPVDGWAGNSGSRSPF* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0472 270 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 270 IPR014476 GO:0003680
Vra11g0472 270 ProSiteProfiles PPC domain profile profile. 83 219 IPR005175 -
Vra11g0472 270 MobiDBLite consensus disorder prediction 23 37 - -
Vra11g0472 270 CDD DUF296 87 170 IPR005175 -
Vra11g0472 270 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 3 270 - -
Vra11g0472 270 SUPERFAMILY AF0104/ALDC/Ptd012-like 83 215 - -
Vra11g0472 270 MobiDBLite consensus disorder prediction 1 76 - -
Vra11g0472 270 Gene3D - 86 218 - -
Vra11g0472 270 Pfam Plants and Prokaryotes Conserved (PCC) domain 87 200 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0472 Vra-Chr11 3490042 3491613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0472 3 270 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 63.455 1.65e-95 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0472 - - gmx:100818680 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0472 11 3490042 3491613 Vra7g1279 7 29528846 29530639 PCT