Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0470 ATGGATTCTCGGGAACCGCACCAGCAACCGCAATTGCCAAACATGATGGTGGGACCCACCACCTACCCTTCCATGTTGGCCCCCGCCACCGCCCGATTTCCTTTCATCAGCAACAACCACCATCACCACCACAACCCTCCTCCTCCTCCACCTCCTCCCGAACCTCTCAACGACAACCATTCCTGCGAGGCTGCGCTGAAGCCGTGCGCGCTCGGAGTGGGTTCATCGGAGTCCTCTAAGAAGAAAAGGGGCCGGCCCAGAAAATATTCTCCAGATGGCAACATTGCCTTGGGCCTGGTCCCAAATTATCCCGCCGCTTCTTCTGCCGAATCTCCCGCCAAGAAGCACCGCGGACGTCCTCCTGGTTCCGGAAAAAAACAGATGGACGCTCTTGGAATCTCTGGAACTGGCTTTACTCCACATGTAATATCAGCGGAAGCTGGCGAGGACATTGCTGCAAAAATTATGGCCTTTTGTGAGCAAGGGCCACGGTCAGTTTGTATTCTCTCTGCCATCGGTCCTATTCGTAATGTCACTATTCGACAGCCGCCTTCTGTTTCATCCCTATCTGGTCCTGATGTGTCGTATGAGGGTGAATTTGAGATCATATCACTTACAGGTTTTACTCAACAATCTGAAAATAATAGTCATAATGGAATGCGTTCCTTGAATGTAAGTTTAGCAGGTCCTGATGGACGAGTATTGGGTGGCGAAGTTGCTGGAGCTCTTACTGCAGCATCGGCAGTGCAGGTCGTTGTGGGTAGCTTTATTGCAGATGGAAAAAAGTCTAGCTCAAATAACATGAAATCTGGACGTTCTACGACGCCATCATCCCAATTGTTAACTTTTGGTGCTCCTACGACTCCGACCACTCCTACTTCTCAGGGGCCTTCAACCGAGTCATCTGAGGATAATGAAAATAGTAATTTTATTAAGGGCCCGGGAGGCCCGGGACTCTCTAACAATGTTAGTCAGCCTATTCATAACCTGCAGATGTACCATCATCAACTGTGGGCTGGCCATACTCAGCAGTGA 1035 0.5034 MDSREPHQQPQLPNMMVGPTTYPSMLAPATARFPFISNNHHHHHNPPPPPPPPEPLNDNHSCEAALKPCALGVGSSESSKKKRGRPRKYSPDGNIALGLVPNYPAASSAESPAKKHRGRPPGSGKKQMDALGISGTGFTPHVISAEAGEDIAAKIMAFCEQGPRSVCILSAIGPIRNVTIRQPPSVSSLSGPDVSYEGEFEIISLTGFTQQSENNSHNGMRSLNVSLAGPDGRVLGGEVAGALTAASAVQVVVGSFIADGKKSSSNNMKSGRSTTPSSQLLTFGAPTTPTTPTSQGPSTESSEDNENSNFIKGPGGPGLSNNVSQPIHNLQMYHHQLWAGHTQQ* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0470 344 MobiDBLite consensus disorder prediction 1 131 - -
Vra11g0470 344 SUPERFAMILY AF0104/ALDC/Ptd012-like 137 257 - -
Vra11g0470 344 MobiDBLite consensus disorder prediction 43 57 - -
Vra11g0470 344 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 43 309 IPR039605 GO:0003680
Vra11g0470 344 Gene3D - 140 270 - -
Vra11g0470 344 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 43 309 - -
Vra11g0470 344 SMART AT_hook_2 80 92 IPR017956 GO:0003677
Vra11g0470 344 SMART AT_hook_2 114 126 IPR017956 GO:0003677
Vra11g0470 344 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 256 IPR005175 -
Vra11g0470 344 ProSiteProfiles PPC domain profile profile. 135 278 IPR005175 -
Vra11g0470 344 MobiDBLite consensus disorder prediction 260 325 - -
Vra11g0470 344 MobiDBLite consensus disorder prediction 1 18 - -
Vra11g0470 344 CDD DUF296 139 256 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0470 Vra-Chr11 3475190 3478862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0470 80 296 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 47.431 2.61e-60 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0470 - - gmx:100789687 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0470 11 3475190 3478862 Vra7g1280 7 29541648 29546870 PCT