Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0467 ATGCCGGTTCCACTTGCCCCCTACCCTCCACCACCTCCACCACCTCGGCCACCTCCATATACGCCTCCACCAAATGGTCCGCAGAACCAACTTGTCTGTTCTGGGTGTAGAAACCTCCTGCTTTATCCGGTTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCCATGCAGTCACAACTGTGCCACCTCCTGAAATGGCCCAGTTAGTATGTGGAGGCTGTCACATTCTCCTCATGTACATCCGTGGAGCCACAAGTGTGCAATGCTCTTGTTGTCACACAGTCAATCTGGCTTTGGAAGCAAATCAAGTGGCACATGTCAACTGTGGGAACTGTAAGATGCTACTGAGGTACCCATATGGAGCAAGATCCGTGAAATGTGCCGTTTGCAGTTTTGTAACATTAGTTGGGATGCAGGCCTCAACAAGTACCACTGAGCAGAAATTCAGCACCTAA 453 0.5099 MPVPLAPYPPPPPPPRPPPYTPPPNGPQNQLVCSGCRNLLLYPVGATSVCCAVCHAVTTVPPPEMAQLVCGGCHILLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCKMLLRYPYGARSVKCAVCSFVTLVGMQASTSTTEQKFST* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0467 150 Pfam LSD1 zinc finger 70 94 IPR005735 -
Vra11g0467 150 Pfam LSD1 zinc finger 33 57 IPR005735 -
Vra11g0467 150 Pfam LSD1 zinc finger 108 132 IPR005735 -
Vra11g0467 150 SUPERFAMILY Multiheme cytochromes 33 129 IPR036280 -
Vra11g0467 150 PANTHER PROTEIN LOL1 1 143 - -
Vra11g0467 150 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 67 96 IPR005735 -
Vra11g0467 150 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 30 60 IPR005735 -
Vra11g0467 150 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 105 135 IPR005735 -
Vra11g0467 150 MobiDBLite consensus disorder prediction 1 23 - -
Vra11g0467 150 PANTHER PROTEIN LSD1 1 143 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0467 Vra-Chr11 3457155 3459243 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vra11g0467 zf-LSD1 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0467 - - vra:106777714 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0467 11 3457155 3459243 Vra7g1283 7 29579913 29582280 PCT