Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0466 ATGAATTACAGTGATAATATTCTCTCCGATAGCCCTCTTGTGAAGAACGCAAACGATCAAGCTAATTGCAAAGCACTTTGGATGAAAGAGTCATCTTCCAATTCGGACAATGGATGGATGGTGCCTTATAAATACTATTCTGTCAAGGGTCCTATTTCTGATTCAAACCCTAATGTTGACTCATCCAGTTGGGTTTTTTGTAATGAGGTTCAATTGAAAGACATTTCGTTGAAACGTATGGAAATTATATACAAAGACACTGTGTCAAAGCTTGTTGCTTTGGGGCACAATGAGGATATTGCCGTGAAAGCGATTTTGCTCAATGTTCATTGTTATGGCGCCAACGATTTGACTACAGACCTGCTGCACAACACCTTGACTTGTTTAGAAAAGGGGAGCATGGACATGTATGAGTTCAAGCCTGTGTTCTCTGATTTGAAGAAGCTTGAGGAGCACACTCTGATGAATCTTGTGTCTTTGTTGCAAGAAGTGAGGCTCGAGTTAGGCGTGGGTGATGCTATGTGGTGTCTCCTCATGAGCGATTACAATGTGTTAAAGGCAATTACCATCCATGTTCCTGTTTTAAGCATGTTTCCTCCTCCTTTAACCGAGCTTGAGAACGAGGAACGGGGATTTAGAAAAGAGGGAGGCTCAGATATTCCTTTGAAAGGGTTCTTTTGTGGTAATGAGATGACTGTACGTTTACAGAGAGACATTGAATTCCCGAAAAAATTTGATCTTACTCCTGCCATGATTTGTTCGTTGAAAAGCAATGTTGCAGCGATTGCTGACGGATACAAGGCCAACTCAAAACAGGTGCAGTCAAATGAAGGAAAATTTCCTGGGATTAGCACTGTTTCGAAATTGGATTCTTCATCTGCTTCTTTGGCTACAATCCTTGGTGATCTGCCTGGTGATTCTCACAATATGAATAACCAGGATGACTTGAAGTCTGTGCTGAGTAAATTTCATCATCTAAATATAGATGAGAACTTGGAGTTTGTGGCAGAAGATGAGAAGGATTCGGTGATAGTCACTCTAGTGCATCAGATAAAGGATCTTGAGAAACAGGTAAAGGAGCGGAAAGATTGGGCACATGAGAAGGCAATCCAAGCTGCAAGAAAGCTAAACAGCTATCTAATTGAGCTGAAAACATTCAGGATAGAAAGAGAGGAGAATCAAAGACTGAAGAAGGGGAAAGAGGCAAATGAGGATCTTGAGGACCCTACCATGGTGAGACTCTTAGAATTGGAGGAGGCCTCGAGAAAGGTTTGTGGTCAAACGGATCTTGCAACTGCAGGAGTTGGGAAACTTGAGACGGAGAAAGCTGAAATCAAAGCAGAGTTAGAAGCTTGTAAATTAAGTGCATCAGAGTATGTCGCAAGCTGCTTGCAAATTGCAAAAAGGGAGAAAAAGTGCTTAAAGAAGCTTATGGCTTGGGAAAAACAGGAAGCGAAGATAAAACAGGATATTTCAGATGAAAAGCAGAAGATTTTGGAGATACAAGAAGAGTTAGCTCAGATTAAACAACGTGCAAAAGAAGCTGAGGTAATGAGGGGTGAAGAGTTAAAGGCTAAGGAGGACGCCTTAGCACTGATTGAAGAGGAACGCCGTTCTATGGAAGCAGCTAAGGCTAATAGAAAAAGAAATCTTAAGGCTTTAAGCCTGAAGATGGAGATAGATTTCCAGCGTCGCAAAGATGATCTTTTAAGACTGGAGCAGGAAATTTCGCGTCTTAAAGCATCTGCACAGTCTGCTACTTTGCCTACATGTGAGTCTGAGGAAGCAGAGCCCCACACAGAGATAATTGCTAAGCTTCTGCAAGAATTAGATAACGTGCCGGATTTTTTTGGAAAAGAAGCCACCGGTAATACTTATAGAGAATGCGTTATATGTGGAAAAGATGAAGTTTCCGTAGTTTTCTTGCCATGTGCACACCAAGTTATGTGTGCCAGTTGCAGTGAAGAGTATGGGAGAAATGGCAAGGCTGTTTGTCCATGCTGCTGGGTTCCAATCGAACAGAGAATTCGTACATTTGGGGGAAGTTCGTAG 2052 0.4191 MNYSDNILSDSPLVKNANDQANCKALWMKESSSNSDNGWMVPYKYYSVKGPISDSNPNVDSSSWVFCNEVQLKDISLKRMEIIYKDTVSKLVALGHNEDIAVKAILLNVHCYGANDLTTDLLHNTLTCLEKGSMDMYEFKPVFSDLKKLEEHTLMNLVSLLQEVRLELGVGDAMWCLLMSDYNVLKAITIHVPVLSMFPPPLTELENEERGFRKEGGSDIPLKGFFCGNEMTVRLQRDIEFPKKFDLTPAMICSLKSNVAAIADGYKANSKQVQSNEGKFPGISTVSKLDSSSASLATILGDLPGDSHNMNNQDDLKSVLSKFHHLNIDENLEFVAEDEKDSVIVTLVHQIKDLEKQVKERKDWAHEKAIQAARKLNSYLIELKTFRIEREENQRLKKGKEANEDLEDPTMVRLLELEEASRKVCGQTDLATAGVGKLETEKAEIKAELEACKLSASEYVASCLQIAKREKKCLKKLMAWEKQEAKIKQDISDEKQKILEIQEELAQIKQRAKEAEVMRGEELKAKEDALALIEEERRSMEAAKANRKRNLKALSLKMEIDFQRRKDDLLRLEQEISRLKASAQSATLPTCESEEAEPHTEIIAKLLQELDNVPDFFGKEATGNTYRECVICGKDEVSVVFLPCAHQVMCASCSEEYGRNGKAVCPCCWVPIEQRIRTFGGSS* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0466 683 Coils Coil 484 518 - -
Vra11g0466 683 Coils Coil 435 455 - -
Vra11g0466 683 Coils Coil 523 550 - -
Vra11g0466 683 Coils Coil 562 582 - -
Vra11g0466 683 SUPERFAMILY RING/U-box 604 675 - -
Vra11g0466 683 ProSiteProfiles Zinc finger RING-type profile. 629 668 IPR001841 -
Vra11g0466 683 Pfam Family of unknown function (DUF6592) 80 189 IPR046527 -
Vra11g0466 683 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 619 680 IPR013083 -
Vra11g0466 683 PANTHER OS05G0141500 PROTEIN 48 682 IPR046934 -
Vra11g0466 683 Pfam Zinc finger, C3HC4 type (RING finger) 627 674 - -
Vra11g0466 683 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 48 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0466 Vra-Chr11 3452651 3456282 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0466 - - vra:106777712 1335.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0466 11 3452651 3456282 Vra7g1286 7 29607595 29613835 PCT