Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0451 ATGTGGTTGTCAAGGAGCGATTGCAATTGTTCAGTATTCACACAGACACCCTGCAACGACCAAGGGATTATATGTTCGAAGTCAACATTGATCTATTGCATCGGTTGGGAGCTGAGTGACGATGCCAAACCAGCTATGGTTTGCACTGCCAATGATTTACAAGGATGGAAGGATTTTCCAAAGGGACTCAGGGTTCTTGTACTTGACGGAGATAGAAGTTCTGCTGCTGAGATAGGAGAACAACTTGAGGCCATGGACTATCATGTTTCTACCTTCTATGACGAGAATGAAGCTTTGTCAGCAGTCTCAAGTAGCCCTGAAGGCTTCCATGTTGCCATAGTGGAGGTGAGTACAAGCAGCAGCCTTGGAGGTTTCAAATTTCTTGAGAATGCAAAGGACTTGCCTACCATTATGATTTCAAAGAATCAGTGCCTGAACACCACGATGAAATGCATTGCGCTTGGTGCCGTTGAGTTTCTCAGTAAACCGCTCTCTGAGGACAAGCTCAAAAATATTTGGCAGCATGTTGTTCACAGGGCCTTTAATTCTAGGGCAAATGGTCTGTCTGAGTCATTAAAACCTGTCAAAGAATCTGTAGAATCAGTGCTGCAGCTTCAAACAGGCAATGAACAAGATAAAACTCATAAAAGGACGATGTCGATTGATTTAGAGAATGTGTCCAGATTTGGTGATAATGACAATGAGCAATCTGTATGTGATAAATATCCGGCTCCTTCAACCCCACAATTGAAACATGGGACACGGTTATTGGATGATGGAGATTGCCATGAGCAGACTAATTTCTCAATAGAAAAAGAAAGTGGAGAACATGATGGGGAATGCAAATCAGTCGAAACTTCATGTGAGAATTTGAATGCTGAAAGTACTCCTCAACCAACTGAACCTGAGGAGACTCCGATTAAGGAGGAAGAGGATTTTGCCGATGGTTCCAAGGGCGAGAGAGCTGTTTCACTGAATCTACAGAATGAAAAGTTTCTCAGCAATGCAGATGGTCACACATCTCCAAAAAAGATGGGAGTTCTTAATGATTCATGTGAGATTAAAGCTAACAGGAAGAAGATGAAAGTAGACTGGACGTCCGAGCTGCATAAAAAATTTGTAAAGGCTGTTGAACAACTAGGCATTGATCAAGCCATTCCTTCTAGAATATTGGAGATAATGAAAGTGGAAGGTTTGACACGGCACAATGTGGCAAGCCATCTTCAGAAATATAGAATGCACAAGAGACAGAGTGCACCTGGGGAAGAAGATCGAAAATGGCATAATCAAAGAGATGCAATGCAAAGGAACTTTTATCTGCAAAGACCAATCATGGCCTACCCTCCCTATCACTCTAATCAAACCATTTCTCCAGCACCTATATATCCTATGTGGGGACAACCAGGAAGTCAAACAGCTGCTGTACAGATTTGGGGGCCTCCTGCGTACCCCTTGTGGCATCCAACAGAAAGTTGGAACTGGAAGCCTTATCCGGGGATGCATGTGGATGCTTGGGGATGCCCATTGTTCCCACCTCCTCAAGCTCCTGGTTTTCCCTTCAATCAAAATATACCTGGATTGCACACTCCTAAACCAATGGATTATAGATTCAGCATGCCGCGTAGCTCCTTTGAGCATCATCCGGCAGAGGAGGTGGTAGACAAGGTTGTGAAGGAAGCAATTAACAAGCCATGGCTACCATTGCCCTTAGGACTCAAAGCTCCTTCCACGGATAGTGTGTTGGCTGAGCTCTCCAAACAAGGCATATCCAGCATCCCTCTTGGCAACAAGGGTTCTTCTGCTCCAAAACCCTGCTGA 1818 0.4428 MWLSRSDCNCSVFTQTPCNDQGIICSKSTLIYCIGWELSDDAKPAMVCTANDLQGWKDFPKGLRVLVLDGDRSSAAEIGEQLEAMDYHVSTFYDENEALSAVSSSPEGFHVAIVEVSTSSSLGGFKFLENAKDLPTIMISKNQCLNTTMKCIALGAVEFLSKPLSEDKLKNIWQHVVHRAFNSRANGLSESLKPVKESVESVLQLQTGNEQDKTHKRTMSIDLENVSRFGDNDNEQSVCDKYPAPSTPQLKHGTRLLDDGDCHEQTNFSIEKESGEHDGECKSVETSCENLNAESTPQPTEPEETPIKEEEDFADGSKGERAVSLNLQNEKFLSNADGHTSPKKMGVLNDSCEIKANRKKMKVDWTSELHKKFVKAVEQLGIDQAIPSRILEIMKVEGLTRHNVASHLQKYRMHKRQSAPGEEDRKWHNQRDAMQRNFYLQRPIMAYPPYHSNQTISPAPIYPMWGQPGSQTAAVQIWGPPAYPLWHPTESWNWKPYPGMHVDAWGCPLFPPPQAPGFPFNQNIPGLHTPKPMDYRFSMPRSSFEHHPAEEVVDKVVKEAINKPWLPLPLGLKAPSTDSVLAELSKQGISSIPLGNKGSSAPKPC* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0451 605 Gene3D - 356 417 - -
Vra11g0451 605 MobiDBLite consensus disorder prediction 270 284 - -
Vra11g0451 605 ProSiteProfiles Response regulatory domain profile. 64 177 IPR001789 GO:0000160
Vra11g0451 605 MobiDBLite consensus disorder prediction 270 318 - -
Vra11g0451 605 MobiDBLite consensus disorder prediction 225 243 - -
Vra11g0451 605 SUPERFAMILY Homeodomain-like 359 416 IPR009057 -
Vra11g0451 605 MobiDBLite consensus disorder prediction 225 255 - -
Vra11g0451 605 Gene3D - 63 191 - -
Vra11g0451 605 SMART REC_2 63 173 IPR001789 GO:0000160
Vra11g0451 605 MobiDBLite consensus disorder prediction 285 302 - -
Vra11g0451 605 PANTHER TRANSCRIPTION ACTIVATOR GLK1 46 600 IPR044825 GO:0003700|GO:0045893
Vra11g0451 605 SUPERFAMILY CheY-like 61 184 IPR011006 -
Vra11g0451 605 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 46 600 - -
Vra11g0451 605 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 360 415 IPR006447 GO:0003677
Vra11g0451 605 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 357 416 IPR017930 -
Vra11g0451 605 Pfam Response regulator receiver domain 65 171 IPR001789 GO:0000160
Vra11g0451 605 Pfam Myb-like DNA-binding domain 363 412 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0451 Vra-Chr11 3330688 3336996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0451 46 593 Response Regulator Gene Family AT4G18020 48.282 8.84e-140 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vra11g0451 Response_reg 3.6e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0451 - - vun:114173738 1082.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0451 11 3330688 3336996 Vra7g1296 7 29778486 29785007 PCT