Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0430 ATGAACTGTTTGTTCTTCAAAAAGAAATCAAAATCCCACCCAGAACTCCCAAAGGGACGGAAGAAGAAAAGCCAGGTTGTGAATGGAGCACCCAAGTCCCCAAGCTCGGTACCATCGCCGAGGAGCATAAAAGAATTGTACAGAGAGAAGGAACAGAGTTACAGAATTTTCAGTTTAAAAGAGCTTGTAGATGCAACAAATGGTTTCAATAGCATGCTGAAGATTGGAGAAGGTGGTTTTGGAAAAGTATATAGAGGAACCATCAGTCCTAAAGATGGAGCTGCTCCAATTGTAGTCGCAATAAAAAAACTTAACGCGCATGGCTTACAGGGACATAAAGAATGGCTAGCGGAAGTTCAATTTCTGAGCGTTGCCAACCACCCTAATTTGGTCAAGCTTCTGGGATACTGCTCAATAGACAGTAAAAGAGGAATCCAACGGTTGTTGGTATATGAGTTCATGTCTAACAGGAGTCTGGAAGATCATCTTTTCAGTGTTTCTTTACCTCCTTTGCCTTGGCCAACAAGATTGCAGATCATGCTCGGTGCTGCTCAAGGATTGTATTATCTCCACAACGGATTGGAGATTCAGGTGATCTACCGAGATTTCAAATCTTCAAATGTGTTGCTGGACAAGCAATTTCATCCCAAACTTTCAGATTTTGGTCTTGCAAGAGAGGGTCCTACAGGTGACAAGACTCATGTATCTACTGCGGTAGTGGGGACACAGGGATATGCTGCCCCAGAGTATGTTCAAACGGGTCATCTGAAAGTTCAGAGTGATATTTGGAGTTTTGGTGTGGTGCTTTATGAGATCCTGACAGGGAGACGTGCATTGAATAGAAACCGTCCAATAGGAGAACAAAAGCTTGTAGAATGGGTTAAACATTATCCTGCCAACAGTAGCAGGTTCAGCACCATCATCGACCGACGTCTCAATAACCAATACTCTCTTGCTGCAGCTCGGAAAGTAGCCAACTTGGCAGATCGCTGCTTGAAGAAGAATCCTCAAGACAGACCCTCCATGAATCAGATAGTGGAAACCTTGAACCAAGCATTGCAGGATTCACAAACCCAAAACACTTCACCTAATAACACTTCTAAATCCACACCATCCAGATTGCTCTCAACTACTCAATAA 1140 0.4333 MNCLFFKKKSKSHPELPKGRKKKSQVVNGAPKSPSSVPSPRSIKELYREKEQSYRIFSLKELVDATNGFNSMLKIGEGGFGKVYRGTISPKDGAAPIVVAIKKLNAHGLQGHKEWLAEVQFLSVANHPNLVKLLGYCSIDSKRGIQRLLVYEFMSNRSLEDHLFSVSLPPLPWPTRLQIMLGAAQGLYYLHNGLEIQVIYRDFKSSNVLLDKQFHPKLSDFGLAREGPTGDKTHVSTAVVGTQGYAAPEYVQTGHLKVQSDIWSFGVVLYEILTGRRALNRNRPIGEQKLVEWVKHYPANSSRFSTIIDRRLNNQYSLAAARKVANLADRCLKKNPQDRPSMNQIVETLNQALQDSQTQNTSPNNTSKSTPSRLLSTTQ* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0430 379 MobiDBLite consensus disorder prediction 1 42 - -
Vra11g0430 379 PANTHER OS01G0588500 PROTEIN-RELATED 9 358 - -
Vra11g0430 379 MobiDBLite consensus disorder prediction 354 379 - -
Vra11g0430 379 PANTHER RECEPTOR-LIKE KINASE PLANT 9 358 - -
Vra11g0430 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Vra11g0430 379 Gene3D Phosphorylase Kinase; domain 1 49 153 - -
Vra11g0430 379 SUPERFAMILY Protein kinase-like (PK-like) 51 349 IPR011009 -
Vra11g0430 379 ProSitePatterns Protein kinases ATP-binding region signature. 75 103 IPR017441 GO:0005524
Vra11g0430 379 CDD STKc_IRAK 75 351 - -
Vra11g0430 379 Pfam Protein tyrosine and serine/threonine kinase 74 349 IPR001245 GO:0004672|GO:0006468
Vra11g0430 379 Gene3D Transferase(Phosphotransferase) domain 1 154 374 - -
Vra11g0430 379 ProSiteProfiles Protein kinase domain profile. 69 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0430 Vra-Chr11 3119184 3121421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0430 1 349 Glycoside Hydrolase AT3G07070 42.659 5.17e-94 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra11g0430 PK_Tyr_Ser-Thr 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0430 - K00924 gmx:100305390 602.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0430 11 3119184 3121421 Vra11g0430 11 3119184 3121421 ECH
Vra11g0430 11 3119184 3121421 Vra7g1317 7 30062942 30066731 PCT