Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0425 ATGGAAGAAGAACGATACGAGACTCTGAAGGAGCTTGGTTCGGGGAACTTTGGAGTGGCAAGGTTGGCCAAAGACAAGAAGACAGGGGAACTTGTTGCTATCAAATACATAGAAAGAGGAAAAAAGATTGATGCGAATGTCCAAAGGGAGATAGTAAACCACCGATCTCTAAGGCATCCGAATATTATTAGGTTCAAAGAGGTATTTCTGACCCATACTCATTTAGCTATTGTCTTGGAGTATGCTGCTGGAGGTGAACTCTTCGAGAGGATATGCAATGCTGGTCGATTGAGTGAAGATGAGGCAAGATTTTTCTTCCAGCAACTAATATCTGGAGTTAGCTATTGTCATTCCATGCAAATATGTCATAGAGATCTGAAATTGGAAAACACTCTACTTGACGGAAATCCAGCTCCTAGACTTAAAATTTGTGACTTTGGTTTCTCCAAGTCTGCTTTGCTGCACTCTCAGCCTAAGTCAACGGTTGGAACTCCTGCATACATTGCTCCAGAAGTTTTGTCACGAAAGGAATATGATGGAAAGATTGCAGATGTTTGGTCGTGTGGTGTGACTCTTTATGTGATGTTAGTTGGAGCATACCCATTTGAAGATCCAGAAGATCCTAAGAATTTCAGAAAGAGTATTGGGAGAATTATGAGTGTTCAATACGCCATACCCGACTACGTTCGTGTTTCTAAGGAGTGCAGGCATCTTATCTCTTCTATTTTTGTTGCTAATCCTGCCAAGAGGATCACCATGTCGGAGATAAAACAACACCTTTGGTTTAGGAAGAACTTGCCGAGGGAGATAATTGAGGCTGAAAGAAGGGGTTACGAGGAAACACAAAAGGACCAACCAAGCCAAAGTGTGGAAGAAATAATGCAGATCATCGAAGAAGCAAGGACAAAAATTCACACTCGTGAGCAAACTTCGACAGGATCGTCGAACGTTGTACATGTTGATGAGGCTAACGAGGAAGTTGATGACCACTTTGCCAAAAATCTAGTCCTTGAGTAA 1017 0.4199 MEEERYETLKELGSGNFGVARLAKDKKTGELVAIKYIERGKKIDANVQREIVNHRSLRHPNIIRFKEVFLTHTHLAIVLEYAAGGELFERICNAGRLSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGNPAPRLKICDFGFSKSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPKNFRKSIGRIMSVQYAIPDYVRVSKECRHLISSIFVANPAKRITMSEIKQHLWFRKNLPREIIEAERRGYEETQKDQPSQSVEEIMQIIEEARTKIHTREQTSTGSSNVVHVDEANEEVDDHFAKNLVLE* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0425 338 SUPERFAMILY Protein kinase-like (PK-like) 4 289 IPR011009 -
Vra11g0425 338 PANTHER SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE 4 332 - -
Vra11g0425 338 MobiDBLite consensus disorder prediction 304 323 - -
Vra11g0425 338 Pfam Protein kinase domain 6 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0425 338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Vra11g0425 338 Gene3D Transferase(Phosphotransferase) domain 1 82 270 - -
Vra11g0425 338 ProSiteProfiles Protein kinase domain profile. 6 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0425 338 CDD STKc_SnRK2 5 261 - -
Vra11g0425 338 SMART serkin_6 6 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0425 338 Gene3D Phosphorylase Kinase; domain 1 1 81 - -
Vra11g0425 338 PANTHER SERINE/THREONINE KINASE 4 332 - -
Vra11g0425 338 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0425 Vra-Chr11 3081845 3085141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0425 5 274 CBL-interacting serine-threonine protein kinases AT4G24400 43.416 1.20e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vra11g0425 Pkinase 9.5e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0425 K14498 - gmx:547797 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0425 11 3081845 3085141 Vra11g0425 11 3081845 3085141 ECH
Vra11g0425 11 3081845 3085141 Vra7g1325 7 30145375 30149634 PCT