Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0423 ATGGATCCATGGAACCTTTCATCCTCCAAGTTTCTCTCTAAACAACTTCCTTACCCTTCTCATCTCTACGCAGAAGAGATTCCCAACATGGGAAATTCCAGTGGTTTGATCAAGGATCTCAGAGGTTCGCAGTTGACAATCTTCTATGATGGCCAAGTTGTTGTCTTTGATGATATTCAAGCTGACAAAGCCAAGGATATCATATCTTTCGCCAACACAGGAATCTCCCAAAACCAGAATGACCATGCTTGCTCGTACCCTGCTGCAATTTCTGCTACTTCCAGCAGACCGTTTCCTTTTCTTATGAACATCATCCCTACCACTGCCAACAATTCGGTTCAGGAGCATCCTCAAACACCATCTAAATCTGTTATATGCGATCTACCTTTGGCTAGAAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGAAAGGATAGAATTGCTGCCAGAGCACCATATCAAACAAGCAATCACATGGAAGCCCTTGGTAAGCCAGGTGAATCCACGCCATGGCTCACCTTGGCATCTAAATCGCTACAAGACGAATCTGATTCTGATAGCAGCTCCAGCTTTGTGTTATTTTAA 585 0.4359 MDPWNLSSSKFLSKQLPYPSHLYAEEIPNMGNSSGLIKDLRGSQLTIFYDGQVVVFDDIQADKAKDIISFANTGISQNQNDHACSYPAAISATSSRPFPFLMNIIPTTANNSVQEHPQTPSKSVICDLPLARKASLHRFLEKRKDRIAARAPYQTSNHMEALGKPGESTPWLTLASKSLQDESDSDSSSSFVLF* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0423 194 MobiDBLite consensus disorder prediction 159 194 - -
Vra11g0423 194 MobiDBLite consensus disorder prediction 171 194 - -
Vra11g0423 194 ProSiteProfiles Tify domain profile. 38 73 IPR010399 -
Vra11g0423 194 PANTHER PROTEIN TIFY 10A 42 175 - -
Vra11g0423 194 Pfam Jas motif 129 154 IPR018467 -
Vra11g0423 194 Pfam tify domain 43 72 IPR010399 -
Vra11g0423 194 SMART tify_2 38 73 IPR010399 -
Vra11g0423 194 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 42 175 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0423 Vra-Chr11 3073040 3074580 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0423 22 177 Tify Gene Family AT1G19180 35.583 4.46e-24 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vra11g0423 tify 2.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0423 K13464 - gmx:100306332 271.552