Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0420 ATGAAGCTTTCTTTTGTTCATAGTTCTTCCTGCTTCACTTATATGCTATATTTTCTAGCATTCCTCTGTTCTTTTTGTTTTAACATGAAACTCAATTTTAAGCACCAACTTGGCCTTCTCTGTGTCACACTGCTCTTACCTGCCCTGTGTTTCTCTCAGGACTCTTTTACTTGCTCAAGAGCAACCTTTTATGGTAGCCCAGATTGTTATGGAAATCCAAGGGGAGCTTGCGGCTTTGGCGAATATGGAAAAACAGTAAACGATGGCAGTGTTGCAGGCGTGTCCTGGCTATGGAAGAATGGATCTGGCTGTGGGGCATGTTATCAGGTTAGGTGTAAAATAGCAGAATTGTGCGATGAGAATGGAGCATACGTGGTGGTGACAGATTATGGTGAGGGAGACAGAACAGACTTTATAATGAGTCGACGAGGGTACTCAAAATTGGGGAGAAACACGTATGCATCTGCAGAGCTATTGAAATACGGTGTAGTGGATGTAGAATACAGAAGGGTCCCCTGTAGATACGGTGGCTACAACCTCTTGGTTAAGGTCCACGAGCACAGCAGAAACCCTCAGTACCTGGCCATTCTCATTCTCTATATTGGTGGAGCTTACGACGTCACTGCTGTTGAGTTGTGGCAGGAAGAGTGCCAAGAGTGGAGGCGAATGCGCAGAGCATTTGGGACAGTGTTTGATGCTGAGAACCCGCCCAGGGGTGACATAAAGTTGAGGTTCCAATTCAGTGGTAATGCAGAGCAGTATTGGGTGCAATCTAAGAATGTTATCTCTGCTGATTGGGAGGCTGGAGCTGTTTATGACTCAGAAATTCGCCTTGGCTAA 840 0.456 MKLSFVHSSSCFTYMLYFLAFLCSFCFNMKLNFKHQLGLLCVTLLLPALCFSQDSFTCSRATFYGSPDCYGNPRGACGFGEYGKTVNDGSVAGVSWLWKNGSGCGACYQVRCKIAELCDENGAYVVVTDYGEGDRTDFIMSRRGYSKLGRNTYASAELLKYGVVDVEYRRVPCRYGGYNLLVKVHEHSRNPQYLAILILYIGGAYDVTAVELWQEECQEWRRMRRAFGTVFDAENPPRGDIKLRFQFSGNAEQYWVQSKNVISADWEAGAVYDSEIRLG* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0420 279 Gene3D - 48 173 IPR036908 -
Vra11g0420 279 PANTHER EXPANSIN-B1-LIKE PROTEIN 32 278 - -
Vra11g0420 279 SUPERFAMILY Barwin-like endoglucanases 41 177 IPR036908 -
Vra11g0420 279 Pfam Expansin C-terminal domain 182 262 IPR007117 -
Vra11g0420 279 PANTHER EXPANSIN-B3 32 278 - -
Vra11g0420 279 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 192 274 IPR007117 -
Vra11g0420 279 SUPERFAMILY PHL pollen allergen 180 274 IPR036749 -
Vra11g0420 279 Pfam Lytic transglycolase 91 168 IPR009009 -
Vra11g0420 279 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 74 178 IPR007112 -
Vra11g0420 279 PRINTS Expansin/Lol pI family signature 55 70 IPR007118 GO:0005576
Vra11g0420 279 PRINTS Expansin/Lol pI family signature 94 112 IPR007118 GO:0005576
Vra11g0420 279 PRINTS Expansin/Lol pI family signature 161 177 IPR007118 GO:0005576
Vra11g0420 279 PRINTS Expansin/Lol pI family signature 220 234 IPR007118 GO:0005576
Vra11g0420 279 PRINTS Expansin/Lol pI family signature 260 274 IPR007118 GO:0005576
Vra11g0420 279 Gene3D - 174 275 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0420 Vra-Chr11 3051393 3053263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0420 29 278 Expansin Gene Family AT4G17030 59.363 1.02e-108 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0420 - - vra:106777337 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0420 11 3051393 3053263 Vra7g1333 7 30288084 30289462 PCT