Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0419 ATGACAACACCAGAAAATAATGGTCATTCGAAGGAAGAAAGATATGGCTCATTGATGAAAGATGGGGCTACTTCCCCTGTTAGGCCAGTGTTTAAGCGGCGTAAAGTTTCCGCCATTCGTGATTTCCCTGATGGGTGTGGACCATCTGCTTCAAAGATTGATGAAGTATCAACTATAAATACTGCAGGATGTGGTTCTGTTAATGGTACAATTGTTGAGGTTAAGAATGGTGAACATTTAGTGGGTGTGAAAACTTCCACATGTGAAAATGATGGTTGGCATTCTGAGGTGAAAGGTTTTCATTTCACGGAGACTCATGGCCCAACAGCTGACAGTGGTTTGGATAAGGACAACCCCATTGTCTCATCTTATCATGTGGATGGATCTACTGCTGAAGATAAAACGGGAATAGTGACTATTAGCCAAATCAATGATTGTGGATCTACTGCTGAAGATAAACCGGGCTTTGTGACTAATAGCCAAACCACTGATCATGGTTTGAACGAGGAAAGCCCTGTAGACACATCTCATAGAGTGGATGAACATAATGCCGAAGATGAAGCTGCAAAAGTGACTCTTGGGCGAACAACTGATTGTGGTGTGAATCAGGAAATCCCTGTGGTCTCATTTCATCAAGTGGATGGGTCTACTCGAGAAGATAAACCTGCAAAAGTGAAACTTGGTCAAACAGAGGACTGCAGTTTGAATCTAGAAAACCATGAGGTCTCATCACATCAAGTGAATGGGTCCGTTGCAGAAGATAAACTGGCAAAAGTGACTGGTGAGCGAACAACTGACTGTGGTTTGAATAAGGAAAACCCTGCGGTCTCATCTCATCTAGTGGATGGCCCTGCTGCCGAAGATAAACCTGCGGAAGTGCCTTTAATGGACCAGGAAACTTTGAATACAGAGTTTTCAAGAACTGCAAACACTGGAAAATGTAACTCCTCATATATGTTGGAGTCGTCTTTACCAGTGGGTGAGATGGCTGTGCCTGATGGTTCAAAACACTTATCCATTGATAAAACATCAGCTTCCAGTGCTTGTATGGTGGAGCCTATAACTAGAAGGTACCTTCCGCAAAGAAAAGTTTCAGCTGTTAGAAACTTCCCTCCTTTATGTGGACGTAATGCTCCACGTCTCAGTAAGGATAAGCATGTGTGTCTAGAAGGGACCTCTTCTTTGAACAACAAGACAAAAGGTCAACAGAACCTGGCTGTAGATGACAATCCATTGAAAAAAGTAGCAGCTACCGATGTAAAAGAAGGTAAGAGTAATATTCAGGATGATGTAAAAGAAGGTAAAAGTAATATTCAGGATGAATATAATTGCAACAGGAAGCTTGTTGACATCGATCAACTTGATTCTGAAAGAAATTCTGCAGAGAGATTGAAAAAGCTGCATGCATGTGAACCATCGACTGAGATGAAAATATCACCTGAAAATGAGAGAGAAAAGTATGCTACATCCTCTGAAACAAGTAATCATCATCAGATCAAAATAAATTCTAAGGCGGTGGTAAAAGAGAAAAATAGGAATGAGACAAAGCCTTCGAAGATATCTCAATCGAAGCATATGTTGAAAGGGAATTTTAACAGATTGCAGGTCACATCACAGAGGAAAGTAATACTAGGTTTGATGGCTGATTCAGAATGTCCGTGGAGTTCTGATAAAGGTACCTCCAAATTGAAGTTGGTTGCTGGTAATAGTAAAGGCAAGAGAAAGAAAGGTGATTCTTTTGCATTGCCTGATAGGTCTAGAACAGAGTATAGTGGTTTGTTGAATGATTCTGAGAAGAAACCTTTGAAAAAGAAAAAGGGAAATCCTACTTCTGTAGGTATGGGTGAATTAGAACTTTGGGGAAAGGAGGATTATCTTAACCCTAATGAAAATGATGACCCTCTTCAAATTGTTCTGAGATCAAATGAGTTTGATGTAAACCTCACTCCCTCTTCTCATTCGAATTTCACTGGTGATGAGAATGACCCAAATGTGACCCGAAAAAAAGTGAGGGAAACATTACGGTTGTTTCAAGTTATTTGTAGAAAGCTTTTACAGGAAGTAGAATCAAAGTTAAATGAGCGAGCAAATAATAAGAGAGTTGATTTAGTTGCTTCAAAGATCCTTAAGGAGAATGGGAAATATGTCAACACAGGCAAGCAAATACTAGGCTGTGTCCCTGGTGTTGAAGTTGGTGATGAATTTCAATATAGAGTGGAGCTTAATATAGTTGGCCTTCATCGTCCAATTCAAGGTGGCATAGATTATGTGCGACACAACGGTAAGATCCTTGCAACCAGTATTGTTGCATCAGGGGGCTATGCTGACGATTTGGATAATTCGGATGTATTGACATATACTGGGCAGGGTGGAAATGTGATGAACAGTGATAAAGAACCTGAAGATCAGAAGCTTGAGCGGGGCAATCTTGCTTTGATGACCAGTAGTATTGAAAAGAATCCTGTTAGAGTAATTCGTGGCTCTGAGTCAATGGATGGAAAATGCAGGACTTATGTTTATGATGGGCTGTATGTAGTTGAGGCAGGTTGGGATGAACAAGGACCACACGGGAAGAAAATTTTTAAATTTCGACTGCAAAGAGAACCTGGTCAACCAGAGCTTCCTTTGAGAGAAGTGAAGAAATCTAAAAAGTTCAAAACTAGAGAAGGTGTATGTGTTGCTGATATTTCTTTTGGAAAAGAACGAATTCCAATATGCGCTGTGAACACCATAGATGATGAAAATCCTCCTCCGTTTAATTACATAACTAGCATGATATACCCCAAATTCCATCTCCTTCCCGCCGAAGGATGTGATTGTATTAGTGGATGCTCAGATTTGGAAAAATGTTCGTGTGTGGTGAAGAATGGGGGAGAGATTCCATTCAATCACAATCAGGCTATTGTACAGGCAAAGCCTTTAGTCTATGAGTGTGGACCTACTTGTAAGTGTCCTTCAACGTGCCATAATAGAGTCAGCCAACTTGGCATAAAGTTTCCACTTGAAATATTTAAAACCCAGTCAAGGGGATGGGGTGTGAGATCCCTGAGTTCAATCCCTTCAGGAAGTTATATCTGTGAATATATAGGGGAGCTTCTTGAAGAAAAGGAAGCTGAACTAAGGGCAGGTAATGATGAGTATCTTTTTGATATTGGAAATAACTGCAGCAACAGTACTACTCTCTGGGATGGACTTACGACTCTCATGCCGGATGCACAGACAAGTTCCTGCGATGTTGTGAAGGATGGTGGTTTTACTATTGATGCTGCTGAGTTTGGCAATATAGGGAGATTCATTAACCATAGTTGCTCACCTAATATAATTGCTCAGAACGTCCTTTATGATCATCATGACACCAGAATGCCTCACATAATGTTCTTTGCTGCTGATAACATTCCTCCTTTGCAAGAGCTGACCTACGATTACAATTACGAACTAGATCAAGTCCGCGATTCTGATGGTAATATAAAAAGGAAGTATTGTTACTGCGGTTCTGCTGAATGTACTGGCAGGATGTATTGA 3522 0.4063 MTTPENNGHSKEERYGSLMKDGATSPVRPVFKRRKVSAIRDFPDGCGPSASKIDEVSTINTAGCGSVNGTIVEVKNGEHLVGVKTSTCENDGWHSEVKGFHFTETHGPTADSGLDKDNPIVSSYHVDGSTAEDKTGIVTISQINDCGSTAEDKPGFVTNSQTTDHGLNEESPVDTSHRVDEHNAEDEAAKVTLGRTTDCGVNQEIPVVSFHQVDGSTREDKPAKVKLGQTEDCSLNLENHEVSSHQVNGSVAEDKLAKVTGERTTDCGLNKENPAVSSHLVDGPAAEDKPAEVPLMDQETLNTEFSRTANTGKCNSSYMLESSLPVGEMAVPDGSKHLSIDKTSASSACMVEPITRRYLPQRKVSAVRNFPPLCGRNAPRLSKDKHVCLEGTSSLNNKTKGQQNLAVDDNPLKKVAATDVKEGKSNIQDDVKEGKSNIQDEYNCNRKLVDIDQLDSERNSAERLKKLHACEPSTEMKISPENEREKYATSSETSNHHQIKINSKAVVKEKNRNETKPSKISQSKHMLKGNFNRLQVTSQRKVILGLMADSECPWSSDKGTSKLKLVAGNSKGKRKKGDSFALPDRSRTEYSGLLNDSEKKPLKKKKGNPTSVGMGELELWGKEDYLNPNENDDPLQIVLRSNEFDVNLTPSSHSNFTGDENDPNVTRKKVRETLRLFQVICRKLLQEVESKLNERANNKRVDLVASKILKENGKYVNTGKQILGCVPGVEVGDEFQYRVELNIVGLHRPIQGGIDYVRHNGKILATSIVASGGYADDLDNSDVLTYTGQGGNVMNSDKEPEDQKLERGNLALMTSSIEKNPVRVIRGSESMDGKCRTYVYDGLYVVEAGWDEQGPHGKKIFKFRLQREPGQPELPLREVKKSKKFKTREGVCVADISFGKERIPICAVNTIDDENPPPFNYITSMIYPKFHLLPAEGCDCISGCSDLEKCSCVVKNGGEIPFNHNQAIVQAKPLVYECGPTCKCPSTCHNRVSQLGIKFPLEIFKTQSRGWGVRSLSSIPSGSYICEYIGELLEEKEAELRAGNDEYLFDIGNNCSNSTTLWDGLTTLMPDAQTSSCDVVKDGGFTIDAAEFGNIGRFINHSCSPNIIAQNVLYDHHDTRMPHIMFFAADNIPPLQELTYDYNYELDQVRDSDGNIKRKYCYCGSAECTGRMY* 1174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0419 1173 MobiDBLite consensus disorder prediction 159 179 - -
Vra11g0419 1173 Gene3D - 707 887 IPR036987 -
Vra11g0419 1173 Pfam SET domain 1010 1143 IPR001214 GO:0005515
Vra11g0419 1173 ProSiteProfiles YDG domain profile. 724 867 IPR003105 -
Vra11g0419 1173 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6-LIKE ISOFORM X1 591 1172 - -
Vra11g0419 1173 SMART set_7 999 1149 IPR001214 GO:0005515
Vra11g0419 1173 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 291 1173 IPR025794 GO:0016571
Vra11g0419 1173 Gene3D SET domain 888 1173 IPR046341 -
Vra11g0419 1173 ProSiteProfiles Post-SET domain profile. 1157 1173 IPR003616 -
Vra11g0419 1173 ProSiteProfiles Pre-SET domain profile. 936 996 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vra11g0419 1173 MobiDBLite consensus disorder prediction 565 610 - -
Vra11g0419 1173 SMART preset_2 893 983 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vra11g0419 1173 SUPERFAMILY SET domain 883 1149 IPR046341 -
Vra11g0419 1173 Pfam SAD/SRA domain 723 871 IPR003105 -
Vra11g0419 1173 MobiDBLite consensus disorder prediction 263 290 - -
Vra11g0419 1173 Pfam Pre-SET motif 896 991 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vra11g0419 1173 ProSiteProfiles SET domain profile. 999 1143 IPR001214 GO:0005515
Vra11g0419 1173 SUPERFAMILY PUA domain-like 707 880 IPR015947 -
Vra11g0419 1173 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 591 1172 - -
Vra11g0419 1173 MobiDBLite consensus disorder prediction 591 605 - -
Vra11g0419 1173 MobiDBLite consensus disorder prediction 475 501 - -
Vra11g0419 1173 SMART G9a_1 719 871 IPR003105 -
Vra11g0419 1173 MobiDBLite consensus disorder prediction 475 491 - -
Vra11g0419 1173 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0419 Vra-Chr11 3044451 3050533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0419 664 1170 Su(var)3-9 homologs AT5G04940 40.494 2.82e-114 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vra11g0419 SAD_SRA 8e-49 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0419 K11420 - gmx:100803378 1417.91