Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0418 ATGGGTAAACAAGGTCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGCAATGGACCACCCGAGAAGCCAGTACTATGCAATGCATGTGGGTCTCGGTGGAGGACCAAGGGAACTCTTGCAAATTATACCCCTTTGCATGCTCGAACAGAAACTGATGCTTGTGGGGATCAAAGGGTTTCCAGGGTAAAGAGCATATCAAATAAGAAGAGAGAAGTGACATTGCTCAAGCCAAATAATGACCATGATAATGAACTATCCGAAGGGTTTGCACCTGATTACAACCAGGGATGTCAAATCTTCGCAGATGAAGATGTAAGCAACCGATCAAGTTCCGGATCAGCTATTTCTAACTCAGAGAGCTGTGCACAATATGGTGCCATGGATGCTTGTGATCTGACAGGTCCTGTTCAGTCAGTGGTTTGGGATGCCATGGTGCCTTCAAAAAAGAGGACATGCGTTGGCCGGCCAAAGGCTTCTTCTGTTGAGAAGCTAACAAAAGATTTATGTACCATTCTTCATGAACAACAGTCTTATTTCTCTGCATCTTCTGAAGAAGATCTTCTTTTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATCAGGCATCCTAGCTATATAGTCCGTGATGAAGAGTCTGAGGCTAGTTCTCTTTCAGTTGATAATAAACAATGCCCAACGAGTGAGGCATATTCTTATGTTAGTCCCATTATGATGCATAATGATTCTAGTTACTTGAAGCCATCATCTCTGAAAGTTGAAAAGATTAGGAACTATACTGACCAAGGATGGCAGCCGGAACAACATAAAAGTGATAAGTCTCAACTTGAAAGAGTACAAATCCTTGGCAATCATGAATCACCCCTGTGCTCTATAGATTTAAATGATATAGTAAACTACGAAGAGTTTTTGAGAATCTTGACAAATGAAGAGCAACAACAGTTACTGAAGTTACTTCCTGGGGTTGATACTGCTAAACTTCCTGATAGCCTTAAAGTCATGTTCAATAGTTCTCAATTCAAGGAGAACATAACTTATTTTCAGCAGCTTCTTGCTGAAGGGGTTTTTGATATCTCTTTGTTGGGGGCAAAACCCGAAGACTGCAAGACTTTGAAAAGATTTGCAATATCCAATCTGTCGAAGTCAAAATGGGTTGAACACTATAATTTTCTCAAGAAATGTAAAAACAAAGGTGGAAAATTTGATTCTTTTGGATCTGCTGTCACAGCAACAACTAATGCTGCAAACAAGAGAACTCGTGACAGCAGAAATCAAAACTTCCCAGAATTGAATACAGAAATGAGGAGCCCAAAAAGAATGATCACAAAGGTTAGCTGTGAGGTGAAAGAGGGTGTAGAAGATGGTGCTTGCTATAGTCCAAAAAGCCTATTTGCTTTGCCTACTGATGCTAGTTCACTCATGCTTGGTTCTTTGAACTTTGTGGAGGAGATTAGTGAGCAGGATCTACTGGTAGAGGTGCCATCTAACACTTCTTTTCCTCAGGCAGAGCTCTTGCACCCAAGTGCTAGTAGCAGCTCAGTCTACTCACATCTTATTCATCATTAA 1593 0.4124 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARTETDACGDQRVSRVKSISNKKREVTLLKPNNDHDNELSEGFAPDYNQGCQIFADEDVSNRSSSGSAISNSESCAQYGAMDACDLTGPVQSVVWDAMVPSKKRTCVGRPKASSVEKLTKDLCTILHEQQSYFSASSEEDLLFESETPMVSVEIGHGSILIRHPSYIVRDEESEASSLSVDNKQCPTSEAYSYVSPIMMHNDSSYLKPSSLKVEKIRNYTDQGWQPEQHKSDKSQLERVQILGNHESPLCSIDLNDIVNYEEFLRILTNEEQQQLLKLLPGVDTAKLPDSLKVMFNSSQFKENITYFQQLLAEGVFDISLLGAKPEDCKTLKRFAISNLSKSKWVEHYNFLKKCKNKGGKFDSFGSAVTATTNAANKRTRDSRNQNFPELNTEMRSPKRMITKVSCEVKEGVEDGACYSPKSLFALPTDASSLMLGSLNFVEEISEQDLLVEVPSNTSFPQAELLHPSASSSSVYSHLIHH* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0418 530 Gene3D - 285 391 IPR038108 -
Vra11g0418 530 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Vra11g0418 530 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Vra11g0418 530 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Vra11g0418 530 Gene3D - 3 77 IPR013088 GO:0006355|GO:0008270
Vra11g0418 530 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Vra11g0418 530 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 1 526 - -
Vra11g0418 530 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Vra11g0418 530 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Vra11g0418 530 PANTHER OSJNBB0038F03.10 PROTEIN 1 526 IPR044589 -
Vra11g0418 530 Pfam Asx homology domain 278 374 IPR028020 -
Vra11g0418 530 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 294 406 IPR044867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0418 Vra-Chr11 3036177 3041414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0418 1 515 C2C2-Gata Transcription Factor Family AT4G17570 50.564 6.68e-150 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vra11g0418 ASXH 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0418 - - gmx:100803914 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0418 11 3036177 3041414 Vra7g1337 7 30320694 30326575 PCT