Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0402 ATGTACGAAGAAACTACCTACGAGTCCGATTTGGCTCTTTTGGATTCCATTCGCCGCCACTTACTCGGGGACTCCGAGGATCTCAAATTCGGACCCCCGATTGTTAACTCGGGCAACACTTCCCTTTACTCTCGGAGCTCCAGTTTCGGTAGGTTGTACCCGTGTTTGAGTAACGACTGGGGAGAACTTCCTCTCAAGGAAGATGATTCGGAGGACATGGTGCTCTACGGTGTTCTTCGCGATGCCGTCAACGTAGGGTGGGTCCCCTCTCTCAACGCGGACTCACCGGACAGTTTTTCTTCGGGTTTCATCCCGGAAGTGAGTGTGAAACCCGAACCGGATGTATTTCAGGCACCGGAACCTGTTTTCACTCCCCCGGTGATTCCCAAGGATGCACCGGCGGTTGTTCCGGCGAAGGGGAAGCACTACCGCGGCGTGAGGCAGCGGCCGTGGGGAAAATTCGCGGCGGAGATCCGCGACCCGGCTAAAAACGGGGCTAGGGTTTGGCTCGGAACGTTTGAGACGGCTGAGGACGCCGCGCTGGCTTACGACCGAGCCGCGTACAGAATGCGCGGGTCTCGGGCTTTGTTGAATTTCCCGCTTCGGATTAATTCGGGCGAGCCCGAACCGGTTCGGGTGACGTCGAAGCGAACGTCGCCGGAGCCTTCGTCTTCGTCGGAGAGTGGATCGTCGGCTAAGAGGCGGAAGAAAGTGGTGGGGTCGACTGTGACGGCTCCTAGTGGATTGAGAACAGGGCAAGGGAAGTCAAGTGGCTCAGTGCACACGTGCGGAACAGTTGTTGGTTAA 807 0.5737 MYEETTYESDLALLDSIRRHLLGDSEDLKFGPPIVNSGNTSLYSRSSSFGRLYPCLSNDWGELPLKEDDSEDMVLYGVLRDAVNVGWVPSLNADSPDSFSSGFIPEVSVKPEPDVFQAPEPVFTPPVIPKDAPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRVTSKRTSPEPSSSSESGSSAKRRKKVVGSTVTAPSGLRTGQGKSSGSVHTCGTVVG* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0402 268 PANTHER BNAANNG21280D PROTEIN 27 243 - -
Vra11g0402 268 MobiDBLite consensus disorder prediction 244 268 - -
Vra11g0402 268 ProSiteProfiles AP2/ERF domain profile. 142 200 IPR001471 GO:0003700|GO:0006355
Vra11g0402 268 MobiDBLite consensus disorder prediction 206 268 - -
Vra11g0402 268 PRINTS Ethylene responsive element binding protein signature 143 154 IPR001471 GO:0003700|GO:0006355
Vra11g0402 268 PRINTS Ethylene responsive element binding protein signature 166 182 IPR001471 GO:0003700|GO:0006355
Vra11g0402 268 PANTHER DNA-BINDING DOMAIN 27 243 IPR044808 GO:0003700|GO:0009873
Vra11g0402 268 SUPERFAMILY DNA-binding domain 142 202 IPR016177 GO:0003677
Vra11g0402 268 CDD AP2 141 200 IPR001471 GO:0003700|GO:0006355
Vra11g0402 268 Gene3D AP2/ERF domain 141 203 IPR036955 GO:0003700|GO:0006355
Vra11g0402 268 Pfam AP2 domain 142 192 IPR001471 GO:0003700|GO:0006355
Vra11g0402 268 SMART rav1_2 142 206 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0402 Vra-Chr11 2935124 2936675 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0402 8 252 AP2-EREBP Transcription Factor Family AT4G17500 54.044 3.69e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra11g0402 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0402 K09286 - gmx:100819649 390.193