Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0401 ATGATGGCAAACCCAAACGCTCTTCAACTTTCTGCTCTCAATCAAATAAAACTGCATCTTCTCGGAGAACTCTCTCCTCTTCCAATCACACCCTCTTCTGATCTCACCAAAAATAACTTCTCTTTTCTATTTGATGAACCAAACCCCACCTCATCTCAATCAAGCTCCCTCTGTTCCCAATCTTCAACTTCTCACTCATCTGCAACAATGGACCAATTTTTCTCTGACTTTTTCGACTTCCCAACTACTTCCACGGAACACCAGTTCCCTCGTTTCGAAATCGAGTCCAAACCCCAAATAATCGATCACCAGACTCCGAATCCACACCCTCAAACATCAACCTCGGATTTCACGTTTTCGAACACGCATGACCGCAAGAAACCTCAGTCAAATCGAAAACCGTCGCTGCAAATCTCTCTCCCGCAAAAGACAGAGTGGATCCAGTTCGGAGAGGGTGAGGTTGCGGGAAAGGTGGTGCAGCCGGCTGCAGAAGAGAAAAAGCACTACAGAGGAGTTCGACAGAGACCGTGGGGGAAGTTCGCGGCGGAGATCCGCGACCCCAACAAGCGTGGCTCCAGGGTGTGGCTGGGGACGTTCGAAACGGCTCTGGAAGCCGCCAAAGCCTACGACCGAGCTGCATTCAGGTTTCGCGGTTCCAAAGCCATCCTCAACTTTCCCCTCGAAGCCGGCGCCGATAGCCGCAAACGCCAAAGGGAAGAGGAAGAGCCGGTGGTGGAAGTCGTTAAGAGGGAAAAGGTAGAAGATTTCGACGTCACCTGTATTAAGGATGCTCCCTTAACGCCGTCTAGCTGGCCAGGCTTCTGGGGTTCCGATGCTAACGGAATCTTCGCCGTGCCGCCTCTGTCGCCGCTATCTCCTCATCCGGCGTTGGGTTATCCACAGCTTATGGTTGTGTGA 918 0.5174 MMANPNALQLSALNQIKLHLLGELSPLPITPSSDLTKNNFSFLFDEPNPTSSQSSSLCSQSSTSHSSATMDQFFSDFFDFPTTSTEHQFPRFEIESKPQIIDHQTPNPHPQTSTSDFTFSNTHDRKKPQSNRKPSLQISLPQKTEWIQFGEGEVAGKVVQPAAEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFETALEAAKAYDRAAFRFRGSKAILNFPLEAGADSRKRQREEEEPVVEVVKREKVEDFDVTCIKDAPLTPSSWPGFWGSDANGIFAVPPLSPLSPHPALGYPQLMVV* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0401 305 PRINTS Ethylene responsive element binding protein signature 169 180 IPR001471 GO:0003700|GO:0006355
Vra11g0401 305 PRINTS Ethylene responsive element binding protein signature 208 228 IPR001471 GO:0003700|GO:0006355
Vra11g0401 305 ProSiteProfiles AP2/ERF domain profile. 168 226 IPR001471 GO:0003700|GO:0006355
Vra11g0401 305 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 290 - -
Vra11g0401 305 SMART rav1_2 168 232 IPR001471 GO:0003700|GO:0006355
Vra11g0401 305 Gene3D AP2/ERF domain 167 228 IPR036955 GO:0003700|GO:0006355
Vra11g0401 305 MobiDBLite consensus disorder prediction 101 119 - -
Vra11g0401 305 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 10 290 - -
Vra11g0401 305 CDD AP2 167 226 IPR001471 GO:0003700|GO:0006355
Vra11g0401 305 Pfam AP2 domain 168 218 IPR001471 GO:0003700|GO:0006355
Vra11g0401 305 SUPERFAMILY DNA-binding domain 168 227 IPR016177 GO:0003677
Vra11g0401 305 MobiDBLite consensus disorder prediction 101 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0401 Vra-Chr11 2923301 2924754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0401 2 305 AP2-EREBP Transcription Factor Family AT4G17490 43.202 3.03e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra11g0401 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0401 K09286 - gmx:100808173 364.77