Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0396 ATGACGGCTGAAAAGGAGGATTTGGGTTTGAGTCTAAGCTTGAGCTTCCCTCACAACGCTCCAACTCCTCTTCATCTCAATCTTCTCTCCACTTCAACTTATTCTTCTTCTCCTTCAAGCCACAACCTTCACAAACCCTCTTGGAACGACCCTTTCGCTTCTTCAGGTGAAGCTGGCTCGTTCCTCCGCGGAATCGACGTGAACCGGTTACCTTCTGCGGTTGATTGCGAAGAGGAAGCGGGTGTCTCGTCTCCAAACAGCACGGTTTCTAGCGTGAGCGAAAAGCGTAGCGAGAGGGAAGCCAACGGAGAAGAAGAGCACGACACAGAGAGAGGTTGTTTCAGAGGAATCAGCGACGAAGAAGAAGGTGAAAATTGTAGAAAGAAACTCAGACTCTCCAAAGACCAATCCATTATTCTGGAAGAGAGTTTCAAAGAACACAGCACTCTTAACCCGAAACAAAAGTTGGCACTGGCGAAACAGTTGGGTCTTCGAGCAAGACAAGTGGAGGTGTGGTTCCAGAACAGAAGAGCAAGGACGAAGCTGAAACAAACGGAGGTGGACTGCGAGTTTTTGAAGAGATGCTGCGAGAATCTAACGGAGGAAAACAGAAGGTTGCAGAAGGAAGTGCAAGAGCTCAGAGCACTGAAACTTTCCCCACAGTTTTACATGCACATGACTCCACCCACCACCCTCACCATGTGTCCCTCTTGCGAGCGTGTCGCTGTTCCCCCTTCCGCTGCCGTTGATGCCGCCGCGCGTCACCATCACGTGCCCCAGACCCACTCTCGGGCCTTCCCCATTGGCCCATGGGCCACCTCTGCCGCTCCTATTTCACACAGGCCCTTCGATGCGCTCCGTCCCAGATCTTGA 873 0.52 MTAEKEDLGLSLSLSFPHNAPTPLHLNLLSTSTYSSSPSSHNLHKPSWNDPFASSGEAGSFLRGIDVNRLPSAVDCEEEAGVSSPNSTVSSVSEKRSEREANGEEEHDTERGCFRGISDEEEGENCRKKLRLSKDQSIILEESFKEHSTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSAAVDAAARHHHVPQTHSRAFPIGPWATSAAPISHRPFDALRPRS* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0396 290 MobiDBLite consensus disorder prediction 76 114 - -
Vra11g0396 290 SUPERFAMILY Homeodomain-like 125 191 IPR009057 -
Vra11g0396 290 PANTHER - 2 280 - -
Vra11g0396 290 SMART halz 183 226 IPR003106 GO:0006355|GO:0043565
Vra11g0396 290 Coils Coil 182 219 - -
Vra11g0396 290 Pfam HD-ZIP protein N terminus 3 100 IPR006712 GO:0005634
Vra11g0396 290 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 280 - -
Vra11g0396 290 SMART HOX_1 125 187 IPR001356 GO:0003677
Vra11g0396 290 ProSitePatterns 'Homeobox' domain signature. 158 181 IPR017970 GO:0000981|GO:0006355
Vra11g0396 290 PRINTS Lambda-repressor HTH signature 154 163 IPR000047 GO:0003677
Vra11g0396 290 PRINTS Lambda-repressor HTH signature 163 179 IPR000047 GO:0003677
Vra11g0396 290 ProSiteProfiles 'Homeobox' domain profile. 123 183 IPR001356 GO:0003677
Vra11g0396 290 Pfam Homeodomain 127 181 IPR001356 GO:0003677
Vra11g0396 290 Gene3D - 131 181 - -
Vra11g0396 290 MobiDBLite consensus disorder prediction 93 114 - -
Vra11g0396 290 CDD homeodomain 127 184 IPR001356 GO:0003677
Vra11g0396 290 Pfam Homeobox associated leucine zipper 183 217 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0396 Vra-Chr11 2890772 2892823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0396 1 290 Homeobox Transcription Factor Family AT5G47370 60.396 1.01e-110 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra11g0396 HD-ZIP_N 2.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0396 K09338 - gmx:100783851 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0396 11 2890772 2892823 Vra7g1355 7 30553210 30555057 PCT