Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0392 ATGGAAGAGAATAAGAGAAATGAAGCAGACGAAGCAAAGAAGAAGAAGAACAAGAAAAGAGAGAGTGAAGAGAAGCAGCGAATGTACCGTGGGGTACGCATGCGTCAGTGGGGTAAATGGGTGTCGGAAATAAGAGAGCCCAAAAAAAAGTCCAGAATCTGGCTCGGCACGTTCCCCACGCCAGAAATGGCGGCTCGAGCCCACGATGTGGCGGCGCTCACTATCAAAGGCACTTCCGCTTTCCTCAATTTCCCCGAACTAGCCTCCCACCTTCCGCGCCCGCCCACCACTTCTCCTAAAGACATTCAAGCCGCCGCCGCCGAAGCTGCTGCACTCAATTGCGACGCCCAGCCTCAGGCCAGAGCTCAAGCCCAAGCCCAAGCCCAAGCCCAGATTATGCCCGATTGGGATGACGCGTTCTTGGACCTCCCTGATCTTTTAGCTGACTCAAGTCAGAGTGCAGGTGGCTTTGGTTACTCTGCGTCGTGGTTCGTAGCCGCACCTGAACATCTTGACTCTGCTTTTCGGCTCGATGACCCTCCTTTCCCGTGGGACTCTTCACTTTAA 567 0.5432 MEENKRNEADEAKKKKNKKRESEEKQRMYRGVRMRQWGKWVSEIREPKKKSRIWLGTFPTPEMAARAHDVAALTIKGTSAFLNFPELASHLPRPPTTSPKDIQAAAAEAAALNCDAQPQARAQAQAQAQAQIMPDWDDAFLDLPDLLADSSQSAGGFGYSASWFVAAPEHLDSAFRLDDPPFPWDSSL* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0392 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 10 154 - -
Vra11g0392 188 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Vra11g0392 188 Pfam AP2 domain 29 77 IPR001471 GO:0003700|GO:0006355
Vra11g0392 188 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Vra11g0392 188 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677
Vra11g0392 188 Coils Coil 2 26 - -
Vra11g0392 188 MobiDBLite consensus disorder prediction 1 27 - -
Vra11g0392 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 154 - -
Vra11g0392 188 Gene3D AP2/ERF domain 28 86 IPR036955 GO:0003700|GO:0006355
Vra11g0392 188 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Vra11g0392 188 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Vra11g0392 188 CDD AP2 29 87 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0392 Vra-Chr11 2859631 2860610 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0392 2 159 AP2-EREBP Transcription Factor Family AT4G16750 56.522 4.12e-48 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra11g0392 AP2 3.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0392 - - gmx:100817503 231.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0392 11 2859631 2860610 Vra7g1360 7 30670245 30671810 PCT