Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0390 ATGGCATCCTCCAAGAAAACTAACAGCAGAGGAGCATGGACCGCGGAGGAAGATCAAAGACTAGCTCAATGCATTGAAATTCACGGTGCAAAGAGGTGGAAAACTATTGCAGTTAAATCAGGTCTAAACAGATGTGGAAAAAGTTGCAGGTTGAGATGGTTAAACTATCTCAGACCCAATATCAAGAGAGGCAACATATCAGTTGAAGAAGAGGATTTGATTATCAGGCTTCACAAACTGCTAGGAAACAGGTGGGCATTGATAGCTAGGAGACTTCCCGGCCGAACAGACAATGAAATAAAGAACTACTGGAATACTTGTTTGTGCAAAAAAGTTAATCATCACAGAAAGGTGAAAGCAGAAACTTCAATGGCGCAACCAAGACATTCGACTAAGAATAGCGAGGAAAAAGTAGCAGTAGAGCATAAAGTAGCCACTGATGATGGAAGTGTGTACTCAGAATTTAACTTTGACGTCAACGAATTCTTCAATTTCTCCATTGAAGGACTCTATTCCTTCGATTGGTTCAGGAGTGATTAA 540 0.4074 MASSKKTNSRGAWTAEEDQRLAQCIEIHGAKRWKTIAVKSGLNRCGKSCRLRWLNYLRPNIKRGNISVEEEDLIIRLHKLLGNRWALIARRLPGRTDNEIKNYWNTCLCKKVNHHRKVKAETSMAQPRHSTKNSEEKVAVEHKVATDDGSVYSEFNFDVNEFFNFSIEGLYSFDWFRSD* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0390 179 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 177 - -
Vra11g0390 179 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Vra11g0390 179 CDD SANT 12 57 IPR001005 -
Vra11g0390 179 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 57 IPR017930 -
Vra11g0390 179 SUPERFAMILY Homeodomain-like 10 104 IPR009057 -
Vra11g0390 179 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 4 177 - -
Vra11g0390 179 Gene3D - 67 141 - -
Vra11g0390 179 Pfam Myb-like DNA-binding domain 63 107 IPR001005 -
Vra11g0390 179 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Vra11g0390 179 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Vra11g0390 179 Gene3D - 10 62 - -
Vra11g0390 179 SMART sant 62 110 IPR001005 -
Vra11g0390 179 SMART sant 9 59 IPR001005 -
Vra11g0390 179 CDD SANT 67 106 IPR001005 -
Vra11g0390 179 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0390 Vra-Chr11 2851050 2852055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0390 10 127 MYB Transcription Factor Family AT5G40330 60.331 2.17e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra11g0390 Myb_DNA-binding 1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0390 K09422 - gmx:100816449 298.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0390 11 2851050 2852055 Vra7g1362 7 30707853 30709285 PCT