Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0375 ATGGAGCGCCACAAATGCAAGCTCTGTTCGAGAACATTCGCCAATGGCAGAGCTCTCGGTGGCCACATGAAGGCTCACTTAGCCACCCTTCCTCTTCCTCTTCCACCCAAACCCCAACCTCTTCCTCAATCCATTAACACTTTCTCTTCCAATTCATCTTCACGTCAAGACATACAACAACACCCTCATAATGAACAACAACAAAAGGCTCTCCTCAACTACGCCTTGCGAGAGAATCCCAAGAAATGTTTCAGGCTCGCAGATCCCGAGTTCGACTCCGGCGCCGTCGTGCAAGACAGGGAGAGCGAGACCGAGTCAAAGAACCCAACCCGCCGACGATCCAAGCGCTCACGCAGGCCCGCCAATTCCCAACCCAAGGCCCGGCCCAAACTCAGCTTCATGGAGTCCCCCGAGCCCGTCAGCTCTGTCTCCGACACTTCCCCTGAAGAAGACGTCGCCATGTGTCTCATGATGCTGTCCAGAGACCGTTGGAGCAAGAACACCCACGCTGCTTTCGACAACAACAACCCCATGGAAGACGACGAAGAAGAGAGATCACTGGAAGAGATCAAGTTCAGAAGAGTTTGCCGGAAGCACCAGTGCCAGAGTTGCGACAAGACGTTTCGATCTTCGCGCGCATTGGGCAGCCACCGAAGCATTTGCGAAGGTTCGGGTAACGATAGTAAAATCTTCGAATGCCCCTTTTGTTTTAAGGTATTTGGGTCTGGTCAAGCTCTGGGTGGCCACAAGAGATCTCATATGGTACCTTCTTCTTCCTCCACTGCCAATGATTCCACCCGTTTCAAAGAAAGTTTCATAGATCTCAACTTCCCTGCTCCACCTGAAGAAGAAGACGATCTCAGCGTGGTTTCCGATGCCCAATTTGATGACTGA 894 0.5201 MERHKCKLCSRTFANGRALGGHMKAHLATLPLPLPPKPQPLPQSINTFSSNSSSRQDIQQHPHNEQQQKALLNYALRENPKKCFRLADPEFDSGAVVQDRESETESKNPTRRRSKRSRRPANSQPKARPKLSFMESPEPVSSVSDTSPEEDVAMCLMMLSRDRWSKNTHAAFDNNNPMEDDEEERSLEEIKFRRVCRKHQCQSCDKTFRSSRALGSHRSICEGSGNDSKIFECPFCFKVFGSGQALGGHKRSHMVPSSSSTANDSTRFKESFIDLNFPAPPEEEDDLSVVSDAQFDD* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0375 297 MobiDBLite consensus disorder prediction 278 297 - -
Vra11g0375 297 MobiDBLite consensus disorder prediction 94 148 - -
Vra11g0375 297 MobiDBLite consensus disorder prediction 43 66 - -
Vra11g0375 297 ProSitePatterns Zinc finger C2H2 type domain signature. 233 253 IPR013087 -
Vra11g0375 297 SMART c2h2final6 199 219 IPR013087 -
Vra11g0375 297 SMART c2h2final6 231 253 IPR013087 -
Vra11g0375 297 SMART c2h2final6 4 26 IPR013087 -
Vra11g0375 297 SUPERFAMILY beta-beta-alpha zinc fingers 197 253 IPR036236 -
Vra11g0375 297 Gene3D Classic Zinc Finger 197 253 - -
Vra11g0375 297 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 293 IPR044303 GO:0006355
Vra11g0375 297 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Vra11g0375 297 Pfam C2H2-type zinc finger 199 218 - -
Vra11g0375 297 Pfam C2H2-type zinc finger 231 254 - -
Vra11g0375 297 Pfam C2H2-type zinc finger 3 28 - -
Vra11g0375 297 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 293 - -
Vra11g0375 297 MobiDBLite consensus disorder prediction 94 110 - -
Vra11g0375 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 231 253 IPR013087 -
Vra11g0375 297 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Vra11g0375 297 MobiDBLite consensus disorder prediction 279 297 - -
Vra11g0375 297 MobiDBLite consensus disorder prediction 30 66 - -
Vra11g0375 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0375 Vra-Chr11 2729678 2731846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0375 1 290 C2H2 Transcription Factor Family AT3G60580 35.562 8.75e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra11g0375 zf-C2H2_6 1.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0375 - - vun:114173003 478.789