Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0350 ATGGGGAGGCAGCCTTGCTGTGACAAACTTGGAGTGAAGAAAGGTCCATGGACTGCTGAGGAAGACAAAAAGCTGATAAACTTCATTCTCACCAATGGCCAGTGCTGTTGGCGTGCTGTTCCCAAGCTTGCTGGTCTTCGCCGTTGTGGTAAGAGTTGTCGTCTTCGCTGGACTAATTATCTGAGGCCTGACTTGAAGAGAGGCCTCCTCACACAGGCAGAAGAACAGCTTGTCATTGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCTGCCAGGTTACCAGGAAGAACAGACAACGAGATTAAGAATCACTGGAACACACACATCAAGAAAAAGCTCCTTAAGATGGGTATTGATCCTGTTACTCATGAAACTCTCAACAAAGAAGCCACATCACAGAATAGTTCTTCCCCTGCAGAGCATCTGTCACAGGTTGATAATATTAATATCCATCAGGTTAAGGAAAATGGTGTGGCTATCAACTCGGAAGAGAATTCCACCTCATCACCAGCTGAAAATTCTTCGGGGGAGGAATCCCTTTTGATGGATAGCATTTGCAGTGATGTGTCTTTGATGAACAGCATGTGGCTGGATGAAACTCCTCTTATGGACACGTTATGGGACACTACACCTAAATTAGAGAATGAAAAATTGCCAATGTGGGAGGACAATTGTTCTTGGTTGTTGGACTGCCAGGATTTTGGAATTCATGATTTTGATTTTAATTGCTCCAGCGAGATTGAATCAAATGCACTGCAAACTCTAGACCTGGACAGAAAAGAACTTTAG 798 0.4461 MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTQAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHETLNKEATSQNSSSPAEHLSQVDNINIHQVKENGVAINSEENSTSSPAENSSGEESLLMDSICSDVSLMNSMWLDETPLMDTLWDTTPKLENEKLPMWEDNCSWLLDCQDFGIHDFDFNCSSEIESNALQTLDLDRKEL* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0350 265 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra11g0350 265 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Vra11g0350 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vra11g0350 265 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra11g0350 265 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vra11g0350 265 CDD SANT 16 61 IPR001005 -
Vra11g0350 265 Gene3D - 12 67 - -
Vra11g0350 265 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra11g0350 265 SMART sant 13 63 IPR001005 -
Vra11g0350 265 SMART sant 66 114 IPR001005 -
Vra11g0350 265 Gene3D - 70 147 - -
Vra11g0350 265 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 248 - -
Vra11g0350 265 CDD SANT 71 112 IPR001005 -
Vra11g0350 265 PANTHER PROTEIN ODORANT1-LIKE 2 248 - -
Vra11g0350 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0350 Vra-Chr11 2514383 2517233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0350 1 257 MYB Transcription Factor Family AT4G12350 56.738 3.74e-101 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra11g0350 Myb_DNA-binding 2.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0350 K09422 - gmx:100800360 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0350 11 2514383 2517233 Vra11g0350 11 2514383 2517233 ECH