Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0347 ATGGAAATTACTCGCCTTCTTTCTCTGTTTCTTCTGATTTCGTTTCTCATTCCTCGTATGGTTCTTGGAACTGCCGAGCTTAGAGCTCTGATGGAGTTGAAGTCCTCTCTGGACCCAGATGGCAAGATCCTAGCTTCGTGGATCAGTGACGGTGATCCATGCAGTGGCTTGTTCGAAGGGGTTGCGTGCAACCAGAACCAGAAAGTGGCCAACATCTCCTTGCAGGGAAAGGGTCTTTCGGGCTGGCTATCTCCAGCACTGGCTGAACTCAAATGCTTGTCAGGTTTATACTTGCATTATAACAACCTTTCTGGTGAGATACCCCCACACATTTCAAATCTCACTGATCTGGCTGATCTCTATCTCGACGTGAATAGTTTATCTGGAACTATTCCTCCTGAGCTCGGCAACATGGCTAGTCTCCAAGTGCTGCAGTTGGGTGATAACCAGTTGGTGGGGAATATACCGACACAGATGGGTTCGTTAAAGCAGCTTAGTACTCTTGCTTTGCAATATAACAAGTTAACTGGTCAAATTCCCCTTAGCTTGGGGACGCTAGAGAAGTTAAGAAGGCTAAATTTGAGCTTCAACAACTTTAATGGTACTGTTCCGGCAACACTAGCACATCTTGAACATTTGGAAGTTCTAGACGTTCAGAATAATTCTTTATCAGGAATCGTTCCTTCGGCATTGAAGAAACTTGGGGAAGGTTTCCAAGGTGCAAACAATCCGGGTTTATGTGGAGTCGAGTTTTCTACTTTGAGAGCTTGCAACAAAGATCAGAATTTAAACGTCAACCATATTGATACCTTGGATCGAGATCAACCCAAAAAGGCTCTTCCAGAGCCTGCAAATGTTCAGTTGCATTGTGATCACACCCATTGTTCAAAATCAAGGTTTCCTCAAATTGTCATCACTGCAGGTGTTATAGCTGTTAGTCTTACATTCGTATGTGCTGGGTTTTTGACATTCTTCAGATACCGCCGTCAAAAGCAACGGATCAGCAATACATCAAGTTCTTCTTCTCAAGGGAAACTTGGTCCTTACCAGCCTAAAGAGTTGTACACAAAAAGTCCTTCTGCACTTGTTAATATTGAGTATTATAGTGGGTGGGATCATTTGTCTAACGGCCAAAACGCTGATGCCGGTGGGTTATTGAATGACTATCTAAGTCAATTCAGGTTTAATGTAGATGAGGTTGAATCTGCAACACAGTATTTCTCGGAAGCCAGTTTACTTGGTAAGAGCAAATTCTCAGCAGTTTATAAAGGAGTTATCAGAGATGGTTCTCTTGTTGCTATCAGAAGCATCAGCGTGACATGCTGTAAAACCGAGGAAGCCGAATTTGTAAAGGGGTTGAACTTACTAACCTCTCTGAGACATGAAAACCTTGTTAGGCTGAGAGGTTTTTGTTGCTCAAGGAGTAGAGGTGAATGTTTCCTTATCTATGACTTTGCCACCATGGGTAACCTTTCCCGATATCTTGACTTGGAAGATGGAAGTGACCATGTGCTCGAGTGGTCCAAAAGAGTTTCTATCATCAACGGCATTGCAAAGGGCATTGGATATCTTCATAGCAATGATGCAAGCAAACCTACAATAGTTCACCAGAATATTTCAGTGGAAAATATTCTCCTAGACCATCAATTTAATCCATTGATCATGGATGCTGGACTACCTAAGCTTCTTGCAGATGATGTTGTTTTCTCAGCTCTTAAAGTAAGTGCTGCAATGGGATACTTGGCTCCCGAATACATTACTACCGGACGATTTACTGAGAAGAGTGACATATACGCATTTGGAGTTATTATTCTTCAAGTTCTGTCTGGCAAGACGACAATAGGTAGTTCAATACGTACAGCAGTTGAGTCTTTCAGGTTTGATGATTCTGTTGATGCCAATCTTAGGGGAACGTATTCAAAATCTGAAGCAGCTACACTTTCAAAGCTTGCAATACAGTGTACTCATGAATCTCCTGACCAAAGACCAACAGTGGTGGATGTGATTCAGGAGTTGAGTGTGTCTTCTGCTCATTTGTAA 2040 0.425 MEITRLLSLFLLISFLIPRMVLGTAELRALMELKSSLDPDGKILASWISDGDPCSGLFEGVACNQNQKVANISLQGKGLSGWLSPALAELKCLSGLYLHYNNLSGEIPPHISNLTDLADLYLDVNSLSGTIPPELGNMASLQVLQLGDNQLVGNIPTQMGSLKQLSTLALQYNKLTGQIPLSLGTLEKLRRLNLSFNNFNGTVPATLAHLEHLEVLDVQNNSLSGIVPSALKKLGEGFQGANNPGLCGVEFSTLRACNKDQNLNVNHIDTLDRDQPKKALPEPANVQLHCDHTHCSKSRFPQIVITAGVIAVSLTFVCAGFLTFFRYRRQKQRISNTSSSSSQGKLGPYQPKELYTKSPSALVNIEYYSGWDHLSNGQNADAGGLLNDYLSQFRFNVDEVESATQYFSEASLLGKSKFSAVYKGVIRDGSLVAIRSISVTCCKTEEAEFVKGLNLLTSLRHENLVRLRGFCCSRSRGECFLIYDFATMGNLSRYLDLEDGSDHVLEWSKRVSIINGIAKGIGYLHSNDASKPTIVHQNISVENILLDHQFNPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIILQVLSGKTTIGSSIRTAVESFRFDDSVDANLRGTYSKSEAATLSKLAIQCTHESPDQRPTVVDVIQELSVSSAHL* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0347 679 SMART LRR_typ_2 210 233 IPR003591 -
Vra11g0347 679 SMART LRR_typ_2 186 209 IPR003591 -
Vra11g0347 679 SMART LRR_typ_2 138 162 IPR003591 -
Vra11g0347 679 SMART LRR_typ_2 90 114 IPR003591 -
Vra11g0347 679 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 7 676 - -
Vra11g0347 679 Gene3D Ribonuclease Inhibitor 179 244 IPR032675 -
Vra11g0347 679 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 676 - -
Vra11g0347 679 SUPERFAMILY Protein kinase-like (PK-like) 389 673 IPR011009 -
Vra11g0347 679 SUPERFAMILY L domain-like 26 233 - -
Vra11g0347 679 Gene3D Phosphorylase Kinase; domain 1 378 485 - -
Vra11g0347 679 Pfam Leucine rich repeat 188 234 IPR001611 GO:0005515
Vra11g0347 679 Gene3D Transferase(Phosphotransferase) domain 1 488 678 - -
Vra11g0347 679 ProSiteProfiles Protein kinase domain profile. 407 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0347 679 Gene3D Ribonuclease Inhibitor 24 178 IPR032675 -
Vra11g0347 679 Pfam Protein tyrosine and serine/threonine kinase 411 672 IPR001245 GO:0004672|GO:0006468
Vra11g0347 679 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0347 Vra-Chr11 2499033 2502063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0347 3 520 Miscellaneous Gene Families AT4G22730 55.993 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vra11g0347 PK_Tyr_Ser-Thr 2.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0347 - - var:108335660 1301.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0347 11 2499033 2502063 Vra11g0347 11 2499033 2502063 ECH