Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0336 ATGGATTCTCTTCCTTTCCACGCAGCAAGAGATCTCCACCTGCACCACCAACACCAGTTTCACTCCTTACAACAAAACACCGAAGACGAACAAAGCAGAAGCAACGGAGGCCTAAACATGGCCCACAAAAGAGAACGCGAAGAAAACAACACCACCAACAGCAATAACAGTGATGGAAAAGAAGGAGGTGGTGGCGGCTCCGGAGAAACCGAGATTTCGAGAAGACCTCGCGGAAGACCCGCCGGATCCAAGAACAAGCCCAAACCCCCGATCATCATCACGCGCGACAGCGCCAACGCCCTCAAAACGCACGTCATGGAAGTCGCCGACGGCTGCGACATCGTCGAGAGCGTCTCCACATTCGCACGCCGCCGCCAGAGAGGCGTTTGCATCATGAGCGGCACGGGAACCGTCACCAATGTCACCCTACGCCAACCCGCTTCTTCCGGCGCCATCGTCACGCTCCACGGCAGGTTCGAGATCTTGTCCCTCGCCGGATCCTTCCTCCCACCTCCGGCGCCGCCCGCTGCTACCGGTTTGACGATATATCTGGCTGGAGGACAAGGGCAGGTAGTAGGAGGAAGCGTGGTTGGCGCACTCATTGCTTCGGGGCCTGTGGTTATCATGTCAGCTTCGTTCAGCAACGCTGCGTATGAGAGACTTCCGTTGGAAGATGAAGACCCTTCGATGCCGCTTCAGGGAGGTTCGATTGGGTCACCAGGCGGCGGCGGCGGCGGCGGGGTGGGTCAAGCGCAGACACCTCAGCCTCTTCTGGGGGATTCCACTGCTCCTCTTTTTCACGGTTTGAATCCGAATCTTCTGAATTCCGTTCAGATGCCTTCGGAAACGTTCTGGGCAACGGGTCGCTCTCCTTACTGA 879 0.5757 MDSLPFHAARDLHLHHQHQFHSLQQNTEDEQSRSNGGLNMAHKREREENNTTNSNNSDGKEGGGGGSGETEISRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDIVESVSTFARRRQRGVCIMSGTGTVTNVTLRQPASSGAIVTLHGRFEILSLAGSFLPPPAPPAATGLTIYLAGGQGQVVGGSVVGALIASGPVVIMSASFSNAAYERLPLEDEDPSMPLQGGSIGSPGGGGGGGVGQAQTPQPLLGDSTAPLFHGLNPNLLNSVQMPSETFWATGRSPY* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0336 292 MobiDBLite consensus disorder prediction 18 92 - -
Vra11g0336 292 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 5 292 IPR014476 GO:0003680
Vra11g0336 292 MobiDBLite consensus disorder prediction 19 38 - -
Vra11g0336 292 ProSiteProfiles PPC domain profile profile. 98 235 IPR005175 -
Vra11g0336 292 SUPERFAMILY AF0104/ALDC/Ptd012-like 98 227 - -
Vra11g0336 292 PIRSF ESCAROLA 8 291 IPR014476 GO:0003680
Vra11g0336 292 Gene3D - 101 229 - -
Vra11g0336 292 CDD DUF296 102 185 IPR005175 -
Vra11g0336 292 Pfam Plants and Prokaryotes Conserved (PCC) domain 102 215 IPR005175 -
Vra11g0336 292 MobiDBLite consensus disorder prediction 225 261 - -
Vra11g0336 292 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 5 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0336 Vra-Chr11 2416875 2418827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0336 43 292 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 61.852 1.23e-81 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0336 - - gmx:100781436 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0336 11 2416875 2418827 Vra11g0336 11 2416875 2418827 ECH