Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0331 ATGAGAAGACACCGTGCTATTCATCTCTCTCATGCTCTACTGTGCACCTTTTTTTATTGTCTTGTGACAGCTTCTGCAGTGACTGAGAAGGAAATTTTGCTTGAATTCAAAGGTAACATCACGGACGATCCACGCGCCAGCTTGAGTTCGTGGGTTTCAAGTGGGAACCCGTGCAACGATTACAAAGGCGTTTCGTGTAACTCTGAAGGGTTTGTGGAGAGAATCGTGCTGTGGAACACTAGCTTGGGAGGGGTGTTATCCTCGTCACTTTCGGGGTTGAAGAGGTTGAGGATATTGACGTTGTTCGGAAACCGTTTCTCGGGTGGTATTCCAGAAGGGTATGGTGATCTTCACTCACTGTGGAAGATCAATTTGAGTTCCAATGCTTTATCTGGTTCTATCCCCGAGTTCATTGGTGATTTGCCTAGCATTCGGTTTCTAGATTTATCCAAGAATGGCTTCACTGGGGAGATACCTTTGGCTTTGTTTCGGCACTGCTACAAAACAAGGTTCGTTTCTCTTTCTCATAACAACCTCGCCGGTTCAATTCCTGCCTCCTTGGTAAACTGCTTTAACCTTGAAGGCTTTGATTTCTCCTTCAACAACCTTAGTGGAGTTGTCCCTTCCGGGCTTTGTGGCATTCCAAGGTTGTCATATGTGTCGCTGAGAAACAATGCCTTGTCAGGGAGCGTGCAGGAGCTCATTTCCTCATGCCAAAGTCTGGAACATTTGGATTTTGGAAGTAACAGGTTCACTGATTTGGCACCGTTCAGTGTCCTTGAAATGCAAAATCTTACCTATCTCAATTTATCGTATAATGGGTTTGGTGGACATATTCCTGAGATCAGTTCCTGTAGTGGGAGATTGCAAATCTTGGATGCTTCGGGGAATCTTTTAGATGGGGAGATTCCCACGAGCATAACAAAATGCAAGAGCCTAAAACTCTTGGCGTTGGAATTGAATAGGCTGGAGGGGAATATCCCAGTGGATATTCAGGAACTGCGGGGACTAATTGTTATCAAATTGGGTAATAATTCCATTGGTGGAATGATCCCCAAGGGCTTTGGCAGCGTCGAGCTTCTTGAATTGCTGGATTTGCACAATCTGAACCTCATTGGCCAAATTCCTGATGATATAAGCAATTGCAAGTTTCTTCTTGGGCTGGACCTTTCTGGTAATAAATTAGAAGGTGAGATTCCTCAGACTCTTTACAACTTGACAAACCTGGAATCCCTTAACCTACATCATAACGAGCTTAATGGAAGCATCCCCCCAAGCCTAGGAAACCTATCAAGGATTCAATACCTAGATCTTTCACATAATTCACTTTCTGGCCCAATCCCTACTTCCCTTGGAAATTTAAATAACTTGACACATTTTGATCTCTCATTCAATAATCTGTCTGGTTTCATTCCTGAGATTGCAAACATACAGCGTTTTGGTGCATCTGCATTTTCCAATAATCCTTTTCTCTGTGGTCGTCCTTTGGACACCCCTTGCCTGGTAAACGGAGCTACATCGCCTTCATCTCCTGGGAAGGCTAAAGTTCTAAGCACCTCAGCAATCGTTGCAATTGTTGCTGCAGCTGTAATTCTCACCGGGGTTTGTTTGGTGACCATCATGAATATGGCGGCACGTGGTAGAAAAAAACAGGATGATCAGATTATGATTGTTGAGAGCACCCCTCTTGGGTCAACAGATTCAAATCTTATAATTGGAAAGCTGGTTCTCTTCAGCAAAAGTTTACCATCAAAATATGAAGATTGGGAGGCAGGTACCAAAGCATTGCTTGATAAAGAGTCTTTGATAGGTGGCGGATCAATTGGTACGGTCTACCGAACTGATTTTGAAGGCGGGATCTCAATTGCAGTGAAGAAGCTCGAGACTATGGGAAGGATTAGAAACCAGGAGGAATTTGAGCATGAAATTGGGCGACTAGGCAATCTTCAACACCCAAATTTAGTTGCTTTTCAAGGTTATTATTGGTCCTCTTCAATGCATTTGATTCTATCAGAGTTTGTCCCAAATGGGAATCTCTATGATAATCTACATGGGTTGGGCTATGCTGGAACCAGTACTAGTAGAGGAAACAGGGAATTATATTGGTCTAGAAGGTTTCAAATTGCAGTGGGAACCGCAAGAGCCCTTGCTTATCTCCACCATGACTGTAGACCCCCAATTCTTCATCTCAACATTAAATCCTCTAACATACTCCTAGATGACAAGTATGAACCTAAGTTGTCTGATTATGGATTAGGAAAGTTACTTCCCATTTTGGATAATTATGGTTTGACCAAATTCCACAATGCTGTGGGATATGTTGCACCAGAGTTGGCTCAAGGGCTGAGGCAGAGTGAGAAATGTGATGTTTACAGTTTTGGAGTCATTCTTTTGGAGCTGGTTACAGGGAGGAAGCCTGTGGAAAGTCCAACCACAAATGAGGTGGTGGTCTTGTGTGAATATGTAAGAGGTTTGTTAGAGACTAGCTCAGCTTCAGATTGCTTTGACAGAAATTTACTGGGCTTTACTGAGAACGAATTAATTCAGGTTATGAGATTGGGACTAATTTGTACTTCGGAGGATCCTTTAAGGAGACCAAGCATGGCTGAGGTTGTCCAGGTCCTTGAGTCCATTAGAAATGGATTAGATTCCCATTAA 2658 0.4319 MRRHRAIHLSHALLCTFFYCLVTASAVTEKEILLEFKGNITDDPRASLSSWVSSGNPCNDYKGVSCNSEGFVERIVLWNTSLGGVLSSSLSGLKRLRILTLFGNRFSGGIPEGYGDLHSLWKINLSSNALSGSIPEFIGDLPSIRFLDLSKNGFTGEIPLALFRHCYKTRFVSLSHNNLAGSIPASLVNCFNLEGFDFSFNNLSGVVPSGLCGIPRLSYVSLRNNALSGSVQELISSCQSLEHLDFGSNRFTDLAPFSVLEMQNLTYLNLSYNGFGGHIPEISSCSGRLQILDASGNLLDGEIPTSITKCKSLKLLALELNRLEGNIPVDIQELRGLIVIKLGNNSIGGMIPKGFGSVELLELLDLHNLNLIGQIPDDISNCKFLLGLDLSGNKLEGEIPQTLYNLTNLESLNLHHNELNGSIPPSLGNLSRIQYLDLSHNSLSGPIPTSLGNLNNLTHFDLSFNNLSGFIPEIANIQRFGASAFSNNPFLCGRPLDTPCLVNGATSPSSPGKAKVLSTSAIVAIVAAAVILTGVCLVTIMNMAARGRKKQDDQIMIVESTPLGSTDSNLIIGKLVLFSKSLPSKYEDWEAGTKALLDKESLIGGGSIGTVYRTDFEGGISIAVKKLETMGRIRNQEEFEHEIGRLGNLQHPNLVAFQGYYWSSSMHLILSEFVPNGNLYDNLHGLGYAGTSTSRGNRELYWSRRFQIAVGTARALAYLHHDCRPPILHLNIKSSNILLDDKYEPKLSDYGLGKLLPILDNYGLTKFHNAVGYVAPELAQGLRQSEKCDVYSFGVILLELVTGRKPVESPTTNEVVVLCEYVRGLLETSSASDCFDRNLLGFTENELIQVMRLGLICTSEDPLRRPSMAEVVQVLESIRNGLDSH* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0331 885 ProSiteProfiles Protein kinase domain profile. 597 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0331 885 SUPERFAMILY Protein kinase-like (PK-like) 598 876 IPR011009 -
Vra11g0331 885 Gene3D Phosphorylase Kinase; domain 1 597 677 - -
Vra11g0331 885 SUPERFAMILY L domain-like 163 492 - -
Vra11g0331 885 Pfam Leucine Rich Repeat 408 430 IPR001611 GO:0005515
Vra11g0331 885 Pfam Leucine Rich Repeat 433 454 IPR001611 GO:0005515
Vra11g0331 885 Pfam Protein kinase domain 599 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0331 885 Gene3D Ribonuclease Inhibitor 165 506 IPR032675 -
Vra11g0331 885 PANTHER UNNAMED PRODUCT 23 882 - -
Vra11g0331 885 Gene3D Transferase(Phosphotransferase) domain 1 678 884 - -
Vra11g0331 885 SMART LRR_typ_2 141 165 IPR003591 -
Vra11g0331 885 SMART LRR_typ_2 358 382 IPR003591 -
Vra11g0331 885 SMART LRR_typ_2 454 476 IPR003591 -
Vra11g0331 885 SMART LRR_typ_2 406 430 IPR003591 -
Vra11g0331 885 SMART LRR_typ_2 262 285 IPR003591 -
Vra11g0331 885 CDD STKc_IRAK 603 878 - -
Vra11g0331 885 Pfam Leucine rich repeat 240 299 IPR001611 GO:0005515
Vra11g0331 885 PANTHER - 23 882 - -
Vra11g0331 885 Gene3D Ribonuclease Inhibitor 26 164 IPR032675 -
Vra11g0331 885 ProSiteProfiles Leucine-rich repeat profile. 240 261 IPR001611 GO:0005515
Vra11g0331 885 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Vra11g0331 885 SUPERFAMILY L domain-like 72 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0331 Vra-Chr11 2374369 2378618 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0331 12 884 Receptor kinase-like Gene Family AT1G62950 64.077 0.0 1098
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Vra11g0331 Pkinase 5.7e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0331 - - gmx:100805681 1560.04