Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0323 ATGGCTTCAACTCTTCAAGCTTTTGCTTTTACAATGAAGTTCATGTTCATTCTGATGTTCATGGGAGAGCAAGCAACAGCTGCGGGGATATTTCGACCCAGTCAATGGGCTCTCGCCCATGCCACCTTTTACGGTGACGAGACTGCTTCTGCCACTATGGGAGGAGCATGCGGGTACGGGAATTTATTTCAAAATGGTTACGGGACAGACACGGCGGCTCTAAGTTCTACGTTGTTCAACAATGGTTATGCGTGTGGAACTTGTTATCAAATAAAGTGTTACCAATCAAGTGCGTGTTATAAGAACGTTGCCTTTACGACGGTGACCGCCACCAATCTTTGCCCTCCTAACTGGGCACAACCCTCCGATAACGGCGGCTGGTGCAATCCACCACGAGTTCATTTTGACATGGCCAAACCCGCTTTCATGAAAATTGCGCAGTGGAAAGCCGGCATCGTCCCTATTATGTACCGCAGAGTGCCATGTGGAAGGAAGGGAGGGATTCGATTCTCTTTTCAAGGAAACGGGTACTGGCTATTGGTGTATGTGATGAACGTGGGAGGTGGAGGAGATATTTCGAGCATGTCGGTGAGAGGAAGCAGAAGTGGATGGATAAGCATGAGCCACAACTGGGGTGCTTCATATCAAGCATTTGCAACTCTTGCTGGCCAAGCTCTTTCTTTCAGGATTACTTCATACACCACCAGAGAAACTATAATTGCATGGAATGTTGCTCCTTCAAACTGGAACGTCGGACTCACATATTCCACCACTGTGAACTTTCGCTGA 789 0.4778 MASTLQAFAFTMKFMFILMFMGEQATAAGIFRPSQWALAHATFYGDETASATMGGACGYGNLFQNGYGTDTAALSSTLFNNGYACGTCYQIKCYQSSACYKNVAFTTVTATNLCPPNWAQPSDNGGWCNPPRVHFDMAKPAFMKIAQWKAGIVPIMYRRVPCGRKGGIRFSFQGNGYWLLVYVMNVGGGGDISSMSVRGSRSGWISMSHNWGASYQAFATLAGQALSFRITSYTTRETIIAWNVAPSNWNVGLTYSTTVNFR* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0323 262 Pfam Lytic transglycolase 71 157 IPR009009 -
Vra11g0323 262 Gene3D - 163 262 IPR036749 -
Vra11g0323 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 257 IPR007117 -
Vra11g0323 262 SMART dpbb_1 71 157 IPR007112 -
Vra11g0323 262 PANTHER EXPANSIN 3 261 - -
Vra11g0323 262 PRINTS Expansin signature 66 80 IPR002963 GO:0009664
Vra11g0323 262 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Vra11g0323 262 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Vra11g0323 262 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Vra11g0323 262 PRINTS Expansin signature 166 178 IPR002963 GO:0009664
Vra11g0323 262 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Vra11g0323 262 PRINTS Expansin signature 243 259 IPR002963 GO:0009664
Vra11g0323 262 PANTHER EXPANSIN-A15 3 261 IPR002963 GO:0009664
Vra11g0323 262 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Vra11g0323 262 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Vra11g0323 262 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Vra11g0323 262 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Vra11g0323 262 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Vra11g0323 262 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Vra11g0323 262 Pfam Expansin C-terminal domain 168 246 IPR007117 -
Vra11g0323 262 Gene3D - 23 162 IPR036908 -
Vra11g0323 262 SUPERFAMILY Barwin-like endoglucanases 35 185 IPR036908 -
Vra11g0323 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 167 IPR007112 -
Vra11g0323 262 SUPERFAMILY PHL pollen allergen 164 256 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0323 Vra-Chr11 2332361 2333657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0323 1 262 Expansin Gene Family AT1G12560 65.399 1.68e-128 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0323 - - gmx:100807807 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0323 11 2332361 2333657 Vra11g0323 11 2332361 2333657 ECH
Vra7g1455 7 31816387 31817885 Vra11g0323 11 2332361 2333657 PCT