Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0319 ATGCAAGAACCAAGCCTGGGAATGATGGGCGGGTTAAGCGGCGAGGTCTCCGGCGATCACCACCGTCAACTGAAGGCGGAGATAGCCACACATCCGCTGTACGAGCAGCTCCTGGCTGCACACGTCGCATGCCTCCGTGTGGCCACTCCCATCGACCAACTTCCTCTCATCGATGCTCAGCTAGCTCACTCTCACCATCTTCTACGATCTTATGTCTCTCACCATACCCACTCTCTCTCCCCCAATGACCGCCAAGAACTCGACAACTTCCTGGCACAGTATTTGATAGTTTTGTGTACTTTCAAAGAACAGCTTCAGCAACATGTCAGAGTCCACGCCGTTGAGGCTGTCATGGCCTGCCGCGATATCGAAAATACCTTACAAGCTCTCACAGGAGTGAGTCTGGGAGAAGGAACTGGTGCAACAATGTCAGATGATGAAGATGACTTACAGATGGATTTTTCTTTGGATCAATCCAGCGCTGAAGGGCATGACATGATGGGATTTGGTCCCTTACTTCCTACAGAATCTGAAAGGTCACTGATGGAGAGAGTTCGTCAGGAACTAAAGATTGAGCTGAAGCAGGGTTTCAAGTCAAGAATTGAAGATGTCAGGGAGGAAATATTAAGGAAACGTAGAGCTGGGAAATTACCAGGTGACACAACTTCTGTGTTAAAGAATTGGTGGCAGCAACATGCAAAGTGGCCTTATCCTACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATTAATAATTGGTTCATCAATCAAAGGAAACGCAACTGGCACAGCAATTCTCAATCGGTTACCTCTTTGAAATCCAAGCGCAAGAGGTAG 858 0.4814 MQEPSLGMMGGLSGEVSGDHHRQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPLIDAQLAHSHHLLRSYVSHHTHSLSPNDRQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGTGATMSDDEDDLQMDFSLDQSSAEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0319 285 SMART KNOX1_2 22 66 IPR005540 GO:0003677|GO:0005634
Vra11g0319 285 SMART KNOX2_2 77 132 IPR005541 GO:0003677|GO:0005634
Vra11g0319 285 ProSiteProfiles 'Homeobox' domain profile. 208 271 IPR001356 GO:0003677
Vra11g0319 285 Pfam KNOX1 domain 24 65 IPR005540 GO:0003677|GO:0005634
Vra11g0319 285 Pfam Homeobox KN domain 228 267 IPR008422 GO:0003677|GO:0006355
Vra11g0319 285 Gene3D - 207 281 - -
Vra11g0319 285 CDD homeodomain 211 272 IPR001356 GO:0003677
Vra11g0319 285 ProSiteProfiles ELK domain profile. 188 208 IPR005539 GO:0003677
Vra11g0319 285 SMART HOX_1 210 275 IPR001356 GO:0003677
Vra11g0319 285 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 285 - -
Vra11g0319 285 Pfam KNOX2 domain 81 131 IPR005541 GO:0003677|GO:0005634
Vra11g0319 285 SUPERFAMILY Homeodomain-like 210 275 IPR009057 -
Vra11g0319 285 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0319 Vra-Chr11 2296424 2301504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0319 1 284 Homeobox Transcription Factor Family AT1G62990 79.452 7.16e-172 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vra11g0319 KNOX2 5.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0319 - - gmx:100808872 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0319 11 2296424 2301504 Vra11g0319 11 2296424 2301504 ECH