LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra11g0318	ATGGCTCATTTGGTTTATGGTGAAACTCCGTCTTTTGGAGCTTCCCACCATGGACAGGCTCAGCAAACTATTCCGTTTCCAACCACTGGAACTTCCTTAAGGATTCTGCTCTTACATGGCAACTTGGAAATATGGGTCAACGAGGCCAAAAACCTTCCTAACATGGACATTCTTCACAAGAAAACGGGAGAAATGGTTTCCATGCTGTCCCGAAAGCTTGGCGGCAAAGTCGAAGGCATCATGTCCAAAACTGGAACCAGTGATCCCTATGTTACGGTGTCTGTAGCGGGTGCTGTGATTGCCAGAACTTTTGTCCTCAGGAACAATGAGAACCCCGTTTGGACGCAGCGTTTCTACGTCCCCGTTGCACATCTAGCTTCTGAAGTCCACTTCGTTGTAAAAGACAGTGATATTGTGGGTTCTCAGATAATTGGAGCAGTGGGAATTCCAGTGGAACAGTTATGTAGTGGCACAAGAGTTGAGGGATTTTTCCCTCTCCTTAGTACTAATGGAAAACCATGTAAGGGTGGAGCAAAGTTGAGTTTATCCATTCAGTACACCCCTGTTGAAAAGGTGGCTCTTTATAGCCATGGAGTAGGTGCTGGTCCTCATTACGAAGGGGTCCCTGACACATACTTTCCCCTTAGAAAAGGTGGAAAAGTTACACTTTATCAAGATGCTCATGTTCGTGAAGGGTGCCTTCCCAGTTTGAAGGTGGATGGGGATGTGAATTATAAGCATGAAAATTGTTGGCACGACATCTTTGATGCAATAAATCAGGCTCGTCGATTGGTTTATATTGTTGGGTGGTCCGTGTACTACAATGTTAGTCTCATTCGGGATATGGGTGATGGAAAGGCTTACACTTTAGGTGACCTTCTCAAAGCTAAATCACAGGAAGGTGTCAGAGTGCTGCTCCTTGTATGGGATGATCCCACTTCTGGAAGCTTGCTTGGACATAAAACGGTTGGACTTATGAACACTCACGATGAGGACACTCGCCAGTTTTTCAAGCATTCTTCGGTACAGGTGCTTCTTTGCCCACGAGCTGGTGGAAAGGGACACAGCTTTCTCAAAACGCAGGAAGCCGGAACAATCTATACCCATCACCAGAAGACAGTCATTGTAGACGCTGATGCAGGTCACAATAAAAGAAAGATAAAAGCTTTCATCGGAGGTCTTGATTTATGTGTGGGTCGATATGATAGCCCAGACCATTCCCTCTTTAGAACTTTGCAGACAACACACAAAGATGACTATCATAATCCTAACTTTGAGGGGCCTGTCACTGATTGTCCAAGACAACCATGGCATGATTTGCATTCCCAAGTTGATGGGCCAGCAGCATACGACATCCTCACCAATTTCGAGGAGCGTTGGTTGAGGGCTTTAAAAATGCATAGATTACGAAAGATGAAAAGTTCGCATGATGATTCACTACTTAAAATTGATAGAATCGCTGACATTGTTGGCATTGGTAATGTTCCTTGCCTAAATGAAGAAAACCAGGAGACTTGGCATACTCAGATCTTCCGATCAATTGATTCCAATTCTGTGAAAGGATTTCCAAAGGAATCACAAGATGCTATAAGAAGGAACTTGGTTTGTGGGAAGAATGTAATGATAGACATGAGCATACATTCTGCTTATGTCAAGGCAATTCGATCGGCCCAAAAGTTCATCTATATTGAGAATCAATACTTTCTTGGCTCATCGTATAACTGGGATTCTTACAAAGACCTTGGTGCAAACAACTTAATTCCAATGGAAATTGCATTAAAAATAGCCAGTAAAATCAAACAGCATGAGAGATTCTCCGTGTATATTGTCATTCCTATGTGGCCTGAAGGAGTACCTAAAAGTACAGCTACTCAGCGGATTCTCTTTTGGCAGTTCAAAACAATGCAAATGATGTATGAAACGGTTTACAAGGCCTTACAGGAGACTGGGCTTGACAATCAGTATGAACCACAGGACTACTTGAATTTCTTTTGCCTTGGTAATCGTGAGATCCCTGACAACCAAAATGTTTCAAATGTTACAAAAACTACCGGAGAAAACATACCACAGGCACTCACTAAAAAGAACAGAAGATTCATGATTTATGTTCATTCAAAAGGGATGATAGTGGATGATGAATATGTGTTACTGGGGTCTGCAAACATCAACCAGAGATCCATGGAAGGCACCAGAGATACAGAAATAGCAATGGGAGCATATCAGCCTAATCACACTTGGGCAAAGAAGCAATCTAGACCTCGTGGACAGGTGCATGGTTATAGAATGTCACTATGGAGCGAACATATAGGAAGTGTGGAAGAATGTTTTGAGGAGCCAGAGAGGCTTGAGTGTGTGAGACGCATAAGGTCATTGAGTGAGAGTAACTGGAGACAGTATGCAGCAGATGATGTAACTGAGATGAAAAGTCATTTACTAAAATATCCGCTTGAAGTTGATTCAAAGGGTAATGTGAAGCCTCTTTCTGGCTGTGAAACATTCCCAGATGTTGGTGGGAACATAAGTGGCACTTTCACAGTACTCAGAGAAAATCTTACCATCTGA	2562	0.429	MAHLVYGETPSFGASHHGQAQQTIPFPTTGTSLRILLLHGNLEIWVNEAKNLPNMDILHKKTGEMVSMLSRKLGGKVEGIMSKTGTSDPYVTVSVAGAVIARTFVLRNNENPVWTQRFYVPVAHLASEVHFVVKDSDIVGSQIIGAVGIPVEQLCSGTRVEGFFPLLSTNGKPCKGGAKLSLSIQYTPVEKVALYSHGVGAGPHYEGVPDTYFPLRKGGKVTLYQDAHVREGCLPSLKVDGDVNYKHENCWHDIFDAINQARRLVYIVGWSVYYNVSLIRDMGDGKAYTLGDLLKAKSQEGVRVLLLVWDDPTSGSLLGHKTVGLMNTHDEDTRQFFKHSSVQVLLCPRAGGKGHSFLKTQEAGTIYTHHQKTVIVDADAGHNKRKIKAFIGGLDLCVGRYDSPDHSLFRTLQTTHKDDYHNPNFEGPVTDCPRQPWHDLHSQVDGPAAYDILTNFEERWLRALKMHRLRKMKSSHDDSLLKIDRIADIVGIGNVPCLNEENQETWHTQIFRSIDSNSVKGFPKESQDAIRRNLVCGKNVMIDMSIHSAYVKAIRSAQKFIYIENQYFLGSSYNWDSYKDLGANNLIPMEIALKIASKIKQHERFSVYIVIPMWPEGVPKSTATQRILFWQFKTMQMMYETVYKALQETGLDNQYEPQDYLNFFCLGNREIPDNQNVSNVTKTTGENIPQALTKKNRRFMIYVHSKGMIVDDEYVLLGSANINQRSMEGTRDTEIAMGAYQPNHTWAKKQSRPRGQVHGYRMSLWSEHIGSVEECFEEPERLECVRRIRSLSESNWRQYAADDVTEMKSHLLKYPLEVDSKGNVKPLSGCETFPDVGGNISGTFTVLRENLTI*	854

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra11g0318	853	Gene3D	Endonuclease Chain A	237	484	-	-
	Vra11g0318	853	SUPERFAMILY	Phospholipase D/nuclease	205	466	-	-
	Vra11g0318	853	PANTHER	PHOSPHOLIPASE D BETA 1-LIKE	8	853	-	-
	Vra11g0318	853	PANTHER	PHOSPHOLIPASE D	8	853	IPR015679	-
	Vra11g0318	853	SUPERFAMILY	Phospholipase D/nuclease	525	782	-	-
	Vra11g0318	853	Gene3D	Endonuclease Chain A	485	752	-	-
	Vra11g0318	853	SMART	pld_4	699	726	IPR001736	GO:0003824
	Vra11g0318	853	SMART	pld_4	365	400	IPR001736	GO:0003824
	Vra11g0318	853	Pfam	Phospholipase D C terminal	773	843	IPR024632	-
	Vra11g0318	853	ProSiteProfiles	Phospholipase D phosphodiesterase active site profile.	699	726	IPR001736	GO:0003824

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra11g0318	Vra-Chr11	2290443	2295234	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra11g0318	32	853	Phospholipase D Gene Family (Wang group)	AT2G42010	67.099	0.0	1236

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra11g0318	K01115		-	gmx:100786241	1599.33

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra11g0318	11	2290443	2295234	Vra11g0318	11	2290443	2295234	ECH

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