Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0318 ATGGCTCATTTGGTTTATGGTGAAACTCCGTCTTTTGGAGCTTCCCACCATGGACAGGCTCAGCAAACTATTCCGTTTCCAACCACTGGAACTTCCTTAAGGATTCTGCTCTTACATGGCAACTTGGAAATATGGGTCAACGAGGCCAAAAACCTTCCTAACATGGACATTCTTCACAAGAAAACGGGAGAAATGGTTTCCATGCTGTCCCGAAAGCTTGGCGGCAAAGTCGAAGGCATCATGTCCAAAACTGGAACCAGTGATCCCTATGTTACGGTGTCTGTAGCGGGTGCTGTGATTGCCAGAACTTTTGTCCTCAGGAACAATGAGAACCCCGTTTGGACGCAGCGTTTCTACGTCCCCGTTGCACATCTAGCTTCTGAAGTCCACTTCGTTGTAAAAGACAGTGATATTGTGGGTTCTCAGATAATTGGAGCAGTGGGAATTCCAGTGGAACAGTTATGTAGTGGCACAAGAGTTGAGGGATTTTTCCCTCTCCTTAGTACTAATGGAAAACCATGTAAGGGTGGAGCAAAGTTGAGTTTATCCATTCAGTACACCCCTGTTGAAAAGGTGGCTCTTTATAGCCATGGAGTAGGTGCTGGTCCTCATTACGAAGGGGTCCCTGACACATACTTTCCCCTTAGAAAAGGTGGAAAAGTTACACTTTATCAAGATGCTCATGTTCGTGAAGGGTGCCTTCCCAGTTTGAAGGTGGATGGGGATGTGAATTATAAGCATGAAAATTGTTGGCACGACATCTTTGATGCAATAAATCAGGCTCGTCGATTGGTTTATATTGTTGGGTGGTCCGTGTACTACAATGTTAGTCTCATTCGGGATATGGGTGATGGAAAGGCTTACACTTTAGGTGACCTTCTCAAAGCTAAATCACAGGAAGGTGTCAGAGTGCTGCTCCTTGTATGGGATGATCCCACTTCTGGAAGCTTGCTTGGACATAAAACGGTTGGACTTATGAACACTCACGATGAGGACACTCGCCAGTTTTTCAAGCATTCTTCGGTACAGGTGCTTCTTTGCCCACGAGCTGGTGGAAAGGGACACAGCTTTCTCAAAACGCAGGAAGCCGGAACAATCTATACCCATCACCAGAAGACAGTCATTGTAGACGCTGATGCAGGTCACAATAAAAGAAAGATAAAAGCTTTCATCGGAGGTCTTGATTTATGTGTGGGTCGATATGATAGCCCAGACCATTCCCTCTTTAGAACTTTGCAGACAACACACAAAGATGACTATCATAATCCTAACTTTGAGGGGCCTGTCACTGATTGTCCAAGACAACCATGGCATGATTTGCATTCCCAAGTTGATGGGCCAGCAGCATACGACATCCTCACCAATTTCGAGGAGCGTTGGTTGAGGGCTTTAAAAATGCATAGATTACGAAAGATGAAAAGTTCGCATGATGATTCACTACTTAAAATTGATAGAATCGCTGACATTGTTGGCATTGGTAATGTTCCTTGCCTAAATGAAGAAAACCAGGAGACTTGGCATACTCAGATCTTCCGATCAATTGATTCCAATTCTGTGAAAGGATTTCCAAAGGAATCACAAGATGCTATAAGAAGGAACTTGGTTTGTGGGAAGAATGTAATGATAGACATGAGCATACATTCTGCTTATGTCAAGGCAATTCGATCGGCCCAAAAGTTCATCTATATTGAGAATCAATACTTTCTTGGCTCATCGTATAACTGGGATTCTTACAAAGACCTTGGTGCAAACAACTTAATTCCAATGGAAATTGCATTAAAAATAGCCAGTAAAATCAAACAGCATGAGAGATTCTCCGTGTATATTGTCATTCCTATGTGGCCTGAAGGAGTACCTAAAAGTACAGCTACTCAGCGGATTCTCTTTTGGCAGTTCAAAACAATGCAAATGATGTATGAAACGGTTTACAAGGCCTTACAGGAGACTGGGCTTGACAATCAGTATGAACCACAGGACTACTTGAATTTCTTTTGCCTTGGTAATCGTGAGATCCCTGACAACCAAAATGTTTCAAATGTTACAAAAACTACCGGAGAAAACATACCACAGGCACTCACTAAAAAGAACAGAAGATTCATGATTTATGTTCATTCAAAAGGGATGATAGTGGATGATGAATATGTGTTACTGGGGTCTGCAAACATCAACCAGAGATCCATGGAAGGCACCAGAGATACAGAAATAGCAATGGGAGCATATCAGCCTAATCACACTTGGGCAAAGAAGCAATCTAGACCTCGTGGACAGGTGCATGGTTATAGAATGTCACTATGGAGCGAACATATAGGAAGTGTGGAAGAATGTTTTGAGGAGCCAGAGAGGCTTGAGTGTGTGAGACGCATAAGGTCATTGAGTGAGAGTAACTGGAGACAGTATGCAGCAGATGATGTAACTGAGATGAAAAGTCATTTACTAAAATATCCGCTTGAAGTTGATTCAAAGGGTAATGTGAAGCCTCTTTCTGGCTGTGAAACATTCCCAGATGTTGGTGGGAACATAAGTGGCACTTTCACAGTACTCAGAGAAAATCTTACCATCTGA 2562 0.429 MAHLVYGETPSFGASHHGQAQQTIPFPTTGTSLRILLLHGNLEIWVNEAKNLPNMDILHKKTGEMVSMLSRKLGGKVEGIMSKTGTSDPYVTVSVAGAVIARTFVLRNNENPVWTQRFYVPVAHLASEVHFVVKDSDIVGSQIIGAVGIPVEQLCSGTRVEGFFPLLSTNGKPCKGGAKLSLSIQYTPVEKVALYSHGVGAGPHYEGVPDTYFPLRKGGKVTLYQDAHVREGCLPSLKVDGDVNYKHENCWHDIFDAINQARRLVYIVGWSVYYNVSLIRDMGDGKAYTLGDLLKAKSQEGVRVLLLVWDDPTSGSLLGHKTVGLMNTHDEDTRQFFKHSSVQVLLCPRAGGKGHSFLKTQEAGTIYTHHQKTVIVDADAGHNKRKIKAFIGGLDLCVGRYDSPDHSLFRTLQTTHKDDYHNPNFEGPVTDCPRQPWHDLHSQVDGPAAYDILTNFEERWLRALKMHRLRKMKSSHDDSLLKIDRIADIVGIGNVPCLNEENQETWHTQIFRSIDSNSVKGFPKESQDAIRRNLVCGKNVMIDMSIHSAYVKAIRSAQKFIYIENQYFLGSSYNWDSYKDLGANNLIPMEIALKIASKIKQHERFSVYIVIPMWPEGVPKSTATQRILFWQFKTMQMMYETVYKALQETGLDNQYEPQDYLNFFCLGNREIPDNQNVSNVTKTTGENIPQALTKKNRRFMIYVHSKGMIVDDEYVLLGSANINQRSMEGTRDTEIAMGAYQPNHTWAKKQSRPRGQVHGYRMSLWSEHIGSVEECFEEPERLECVRRIRSLSESNWRQYAADDVTEMKSHLLKYPLEVDSKGNVKPLSGCETFPDVGGNISGTFTVLRENLTI* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0318 853 Gene3D Endonuclease Chain A 237 484 - -
Vra11g0318 853 SUPERFAMILY Phospholipase D/nuclease 205 466 - -
Vra11g0318 853 PANTHER PHOSPHOLIPASE D BETA 1-LIKE 8 853 - -
Vra11g0318 853 PANTHER PHOSPHOLIPASE D 8 853 IPR015679 -
Vra11g0318 853 SUPERFAMILY Phospholipase D/nuclease 525 782 - -
Vra11g0318 853 Gene3D Endonuclease Chain A 485 752 - -
Vra11g0318 853 SMART pld_4 699 726 IPR001736 GO:0003824
Vra11g0318 853 SMART pld_4 365 400 IPR001736 GO:0003824
Vra11g0318 853 Pfam Phospholipase D C terminal 773 843 IPR024632 -
Vra11g0318 853 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 699 726 IPR001736 GO:0003824
Vra11g0318 853 Pfam Phospholipase D Active site motif 366 400 IPR001736 GO:0003824
Vra11g0318 853 CDD C2_plant_PLD 36 187 - -
Vra11g0318 853 Pfam PLD-like domain 551 735 IPR025202 -
Vra11g0318 853 PIRSF PLD_plant 28 853 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vra11g0318 853 Pfam C2 domain 40 166 IPR000008 -
Vra11g0318 853 ProSiteProfiles C2 domain profile. 16 164 IPR000008 -
Vra11g0318 853 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 365 400 IPR001736 GO:0003824
Vra11g0318 853 Gene3D C2 domain 35 186 IPR035892 -
Vra11g0318 853 SMART C2_3c 41 163 IPR000008 -
Vra11g0318 853 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 38 189 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0318 Vra-Chr11 2290443 2295234 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0318 32 853 Phospholipase D Gene Family (Wang group) AT2G42010 67.099 0.0 1236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0318 K01115 - gmx:100786241 1599.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0318 11 2290443 2295234 Vra11g0318 11 2290443 2295234 ECH