Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0314 ATGGAACACGACTCAGAAGCATCATGCGAAACAGGTTCTCCGACAACAGTTCAGAGTAGTGGGTATTCAGACGAGGAAGTGATACTCGCATCGTCGCGGCCGAAGAAGCGAGCTGGGAGAAGAGTGTTCAAGGAGACTAGGCACCCCGTGTACCGGGGAGTGCGACGGAGGAATAACAACAAGTGGGTCTGCGAGATGCGAGTTCCCAACAACAATTCACGGATTTGGCTCGGCACCTACCCCACGCCGGAAATGGCTGCGCGGGCGCACGACGTTGCGGCCCTCGCGCTCCGGGGAAAGTCCGCCTGCCTCAATTTCGCCGACTCCGTGTGGCGGCTGGCGGTGCCTGACAGCACAGACGCGGAGGAGATACGGCGAGCGGCGGTGGAGGCTGCGGAGGCATTTATGGGTGAGGATGTTAGCCAACAGCAGAGGAATGAAGGAATTGAAGAGCCCCCGCGACTGCAACAAGAAGAGATGTCGGAAGTTGAAGAGTTGCATGATTTGCTTCTGCGAATTGCGAATGAGCCTTTGATGTCTCCTCCTCCTTGTGTGAGAGATGGTAGGGAGTGGAATGACGTGGAGATATTTGATGCTGAGGTTTCGCTGTGGAGCTTTTCAATTTGA 627 0.5582 MEHDSEASCETGSPTTVQSSGYSDEEVILASSRPKKRAGRRVFKETRHPVYRGVRRRNNNKWVCEMRVPNNNSRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSVWRLAVPDSTDAEEIRRAAVEAAEAFMGEDVSQQQRNEGIEEPPRLQQEEMSEVEELHDLLLRIANEPLMSPPPCVRDGREWNDVEIFDAEVSLWSFSI* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0314 208 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Vra11g0314 208 Pfam AP2 domain 49 99 IPR001471 GO:0003700|GO:0006355
Vra11g0314 208 MobiDBLite consensus disorder prediction 1 42 - -
Vra11g0314 208 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 9 208 IPR045277 GO:0003700
Vra11g0314 208 MobiDBLite consensus disorder prediction 8 26 - -
Vra11g0314 208 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Vra11g0314 208 SUPERFAMILY DNA-binding domain 50 109 IPR016177 GO:0003677
Vra11g0314 208 CDD AP2 51 109 IPR001471 GO:0003700|GO:0006355
Vra11g0314 208 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Vra11g0314 208 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Vra11g0314 208 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700|GO:0006355
Vra11g0314 208 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 9 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0314 Vra-Chr11 2243359 2244245 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0314 24 206 AP2-EREBP Transcription Factor Family AT1G63030 53.514 1.28e-63 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra11g0314 AP2 6.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0314 - - gmx:100789097 278.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0314 11 2243359 2244245 Vra11g0314 11 2243359 2244245 ECH
Vra8g2277 8 41052167 41053589 Vra11g0314 11 2243359 2244245 ECH
Vra7g1465 7 31931272 31932567 Vra11g0314 11 2243359 2244245 PCT