Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0313 ATGGCTCCCTCACCCTCTTCCAAGAGGCACCCACTCTACCGAGGAATCCGTTCCCGGGGAAGAAAATGGGTCTCCGAAATCCGCGAGCCACGCAAGGCCTCCCGCATATGGCTCGGCACCTTCCCCACGCCGGAGATGGCCGCCGCCGCCTACGACGTCGCAGCATTGGCCTTGAAAGGCGACGGCGCTGTTCTCAACCTCCCTCACTCCGTCTCCAAGTATCAAATCCCTGCAACCAACTCTGCGGCGGATATCCGAACTGCTGCCTCCGCTGCGGCCGCAATGATGAAGGCTGAAACGGAATCTTCCCACAACATTGCATCACAAACTGAAACTACCCACATCGATGCTACAACCTGGAGGTTTGAAAATGATTTCCTTGACGAGGAAGCCATTTTCGGCATGCCAAGTCTTCTGGTTGACATGGCCGGGGGAATGCTTCTGTCGCCGCCCAGAATGAGCCCGCCACCGTCGGATAACTCGCCGGAGAAACAAGCTGCAGAGACTTTGTGGAGTTATTTTTGA 525 0.5657 MAPSPSSKRHPLYRGIRSRGRKWVSEIREPRKASRIWLGTFPTPEMAAAAYDVAALALKGDGAVLNLPHSVSKYQIPATNSAADIRTAASAAAAMMKAETESSHNIASQTETTHIDATTWRFENDFLDEEAIFGMPSLLVDMAGGMLLSPPRMSPPPSDNSPEKQAAETLWSYF* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0313 174 MobiDBLite consensus disorder prediction 149 174 - -
Vra11g0313 174 CDD AP2 11 70 IPR001471 GO:0003700|GO:0006355
Vra11g0313 174 Pfam AP2 domain 11 60 IPR001471 GO:0003700|GO:0006355
Vra11g0313 174 Gene3D AP2/ERF domain 12 70 IPR036955 GO:0003700|GO:0006355
Vra11g0313 174 SUPERFAMILY DNA-binding domain 12 70 IPR016177 GO:0003677
Vra11g0313 174 SMART rav1_2 12 74 IPR001471 GO:0003700|GO:0006355
Vra11g0313 174 ProSiteProfiles AP2/ERF domain profile. 12 68 IPR001471 GO:0003700|GO:0006355
Vra11g0313 174 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 2 174 - -
Vra11g0313 174 PANTHER ETHYLENE RESPONSE FACTOR 2 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0313 Vra-Chr11 2232612 2233378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0313 7 173 AP2-EREBP Transcription Factor Family AT5G52020 52.571 8.40e-48 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra11g0313 AP2 1.3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0313 - - gmx:100811020 247.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1466 7 31953430 31954087 Vra11g0313 11 2232612 2233378 PCT